Gene detail information of Glyur001160s00034796.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02760.12.00E-84ubiquiting-conjugating enzyme 2
NRXP_008389513.12.10E-107PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Malus domestica]
COGYP_008797956.13.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35130|UBC2_MEDSA1.00E-107Ubiquitin-conjugating enzyme E2 2
trEMBLtr|W9R9N2|W9R9N2_9ROSA8.00E-108Ubiquitin-conjugating enzyme E2 2 {ECO:0000313|EMBL:EXB63828.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011607048676001-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10573UBE2A, UBC2, RAD6A EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001160s00034796.1PF00179.21UQ_con81443.10E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control179.829
SRR1783600control180.707
SRR1783602moderate drought stress149.203
SRR1811619moderate drought stress147.661

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain178.484
DRR006520Root Summer glycyrrhizin high producing strain177.080
DRR006521Root Winter glycyrrhizin high producing strain250.561
DRR006522Root Winter glycyrrhizin high producing strain243.003
DRR006523Root Summer glycyrrhizin low producing strain156.271
DRR006524Root Summer glycyrrhizin low producing strain155.199
DRR006525Leaf Summer glycyrrhizin high producing strain115.106
DRR006526Leaf Summer glycyrrhizin high producing strain114.177

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)140.235
SRR2868004Drought Stress(Tissue:root)143.738
SRR2967015Control (Tissue:root)121.672

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave106.792
SRR9715740Leave99.741
SRR9715741Leave113.281
SRR9715739Root88.607
SRR9715742Root88.125
SRR9715743Root72.316

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h112.455
SRR8749028MeJA induced 9h91.263
SRR8749029MeJA induced 9h111.698
SRR8749030Uninduced94.882
SRR8749031Uninduced87.469
SRR8749032Uninduced84.812

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root115.135
SRR8400027Control-Root104.543

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved