Gene detail information of Glyur001163s00025216.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19570.11.00E-65cytidine deaminase 1
NRXP_003620936.12.94E-135Cytidine deaminase [Medicago truncatula]
COGYP_004651685.11.00E-56cytidine deaminase [Parachlamydia acanthamoebae UV-7]
Swissprottr|O65896|CDA1_ARATH2.00E-105Cytidine deaminase 1
trEMBLtr|G7KJU9|G7KJU9_MEDTR1.00E-135Cytidine deaminase {ECO:0000256|PIRNR:PIRNR006334}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011633560036547-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01489cdd, CDA EC:3.5.4.5 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

biological_process

GO:0009972  cytidine deamination


molecular_function

GO:0003824  catalytic activity

GO:0004126  cytidine deaminase activity

GO:0008270  zinc ion binding

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001163s00025216.1PF00383.17dCMP_cyt_deam_1351181.60E-11
Glyur001163s00025216.1PF08211.6dCMP_cyt_deam_21392942.40E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control113.779
SRR1783600control114.628
SRR1783602moderate drought stress152.609
SRR1811619moderate drought stress129.866

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.418
DRR006520Root Summer glycyrrhizin high producing strain9.916
DRR006521Root Winter glycyrrhizin high producing strain22.305
DRR006522Root Winter glycyrrhizin high producing strain22.110
DRR006523Root Summer glycyrrhizin low producing strain13.021
DRR006524Root Summer glycyrrhizin low producing strain12.704
DRR006525Leaf Summer glycyrrhizin high producing strain29.146
DRR006526Leaf Summer glycyrrhizin high producing strain28.940

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)96.607
SRR2868004Drought Stress(Tissue:root)147.026
SRR2967015Control (Tissue:root)126.911

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.124
SRR9715740Leave17.112
SRR9715741Leave25.816
SRR9715739Root50.972
SRR9715742Root52.604
SRR9715743Root45.759

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.631
SRR8749028MeJA induced 9h56.592
SRR8749029MeJA induced 9h66.611
SRR8749030Uninduced24.326
SRR8749031Uninduced75.434
SRR8749032Uninduced106.538

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.097
SRR8400027Control-Root32.942

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved