Gene detail information of Glyur001163s00025221.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19590.11.00E-118ACC oxidase 1
NRXP_003529081.10PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 1-like isoform X1 [Glycine max]
COGYP_008517939.12.00E-17putative oxidoreductase, 2OG-Fe(II) oxygenase family [Variovorax paradoxus B4]
Swissprottr|Q9ZUN4|ACCO1_ARATH3.00E-1481-aminocyclopropane-1-carboxylate oxidase 1
trEMBLtr|K7L1E9|K7L1E9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G15480.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011634915951215-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05933E1.14.17.4 EC:1.14.17.4 Cysteine and methionine metabolism map00270


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016706  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001163s00025221.1PF14226.1DIOX_N3957.40E-15
Glyur001163s00025221.1PF03171.152OG-FeII_Oxy1472441.40E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.257
SRR1783600control1.157
SRR1783602moderate drought stress0.259
SRR1811619moderate drought stress0.255

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.381
DRR006520Root Summer glycyrrhizin high producing strain3.354
DRR006521Root Winter glycyrrhizin high producing strain73.608
DRR006522Root Winter glycyrrhizin high producing strain70.707
DRR006523Root Summer glycyrrhizin low producing strain54.565
DRR006524Root Summer glycyrrhizin low producing strain54.409
DRR006525Leaf Summer glycyrrhizin high producing strain0.062
DRR006526Leaf Summer glycyrrhizin high producing strain0.061

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.427
SRR2868004Drought Stress(Tissue:root)4.136
SRR2967015Control (Tissue:root)2.699

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.032
SRR9715741Leave0.000
SRR9715739Root0.218
SRR9715742Root1.242
SRR9715743Root1.241

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h132.391
SRR8749028MeJA induced 9h132.717
SRR8749029MeJA induced 9h43.690
SRR8749030Uninduced753.546
SRR8749031Uninduced444.891
SRR8749032Uninduced400.770

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.186
SRR8400027Control-Root62.321

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved