Gene detail

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Gene detail information of Glyur001163s00025222.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56840.1	2.00E-28	myb-like transcription factor family protein
NR	XP_004513098.1	3.07E-88	PREDICTED: uncharacterized protein LOC101505306 [Cicer arietinum]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	1.00E-20	Transcription factor MYB1R1
trEMBL	tr\|G7KJT9\|G7KJT9_MEDTR	5.00E-84	MYB-like transcription factor family protein {ECO:0000313\|EMBL:AES77144.1}

Sequence

Transcript Sequence

>Glyur001163s00025222.1
CCGTCATCATATATATCGCCAAACACACACATCTGTTATTCCTGCTCTCTTTGTCTCTCTTCATTTCTTTCTCTCCTTCTTAGAGACAAAAAGAAAAACAGTACTTTGGCGTGTGTGTTGTGCTCTGTTGAGACCTTTAGAAAATGGGGAGGAAGTGCTCACATTGTGGAAACATTGGGCACAATTCAAGGACTTGCAGCTCTTTCAGATCAACTGTGAGTAGTAGTAGCAGTTTTGTAGGAGTTCGACTCTTTGGGGTTCAACTTGACTCATCATGTGTCACCAATATGATCAAGAAGAGCTTTAGCATGGATTCCTTTCCCACTTCCACATCCTCTCCTTCTTCTTCTTCTTTCTCTTCCTCAAGAATAACCAATAATATTGATGACAATTCTGACAGAACCTCTATTGGGTATCTCTCAGATGGTCTCATAGTTCGAGCACAAGACAGGAAGAAAGGAGTTCCGTGGACAGAAGAAGAGCATAGAACATTCCTTGTTGGACTTGAGAAGCTGGGAAAAGGAGACTGGAGGGGTATCTCAAGAAACTATGTGACCACAAGAACCCCAACCCAAGTTGGTAGAGGCAGCACAANTAACACAACAGGCGATTCAGTTTCTAGACATGAACAACTGAAGGTTAAATCAAAATGTGAATTAGATGAGAAGGATGCCACTTTGTCACTGCTCCCTTCATTTCAACAAGAAACCAAATCAGCTGATGATGTGCAGAAGAAAACTACTGCTGCTGATAATAACGTTGAAGCTGCAGCAGGTGCTGCAGAACAACAACAAGAAGGTGTGGCTATGTGGCTTCATAATCCACACACCAAATCCTTAAACATGATGAAACTGGCAATGGAAAATGCAGCAGCAGCAGCAGCAGCAGCAGCACCTGATCTTGAGCTCACTCTTTCAGTCCCCAACAAGAAGGCTAATAACACTACCCTGCAGCAGCAGGAACAAGATCAAACATCCCCCACTTCCTTCCTTCTTGGCCCAATTAGCGTCACTTAAACAAACAAACAAACACATTCTTTTTGGTGTTAATGGTAGTCACTATATTAGGCAGNACTAATCTATATATGCAATAATCATAATCCCTTATACTAGCTAATNCGTATACCTTCATGTGTAGATCGAGCAGTTTAATACAGTATGTATTAATATATATAATATATATGCCACTGCTAAGTTCTCTGTTCAGCGGAATTACTTTTATTCAACTATGAAATTTTACCTTTTTTTTTTAATNAATTAGCAAGTCATCTTGACATCGATACCTACCTACCCTATATATAATATACCATGTTTTTAATATGTACTTGGTGTACTAAAACATTGATTCAATGTATAATTGACAAGTTTAAATTTTGGTTGCTTGTATA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01163	59271	61395	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related
EAR motif-containing Proteins	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001163s00025222.1	PF00249.26	Myb_DNA-binding	108	145	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.088
SRR1783600	control	55.282
SRR1783602	moderate drought stress	105.713
SRR1811619	moderate drought stress	104.875

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.449
DRR006520	Root Summer glycyrrhizin high producing strain	18.742
DRR006521	Root Winter glycyrrhizin high producing strain	0.135
DRR006522	Root Winter glycyrrhizin high producing strain	0.156
DRR006523	Root Summer glycyrrhizin low producing strain	11.898
DRR006524	Root Summer glycyrrhizin low producing strain	9.905
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.110

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.571
SRR2868004	Drought Stress(Tissue:root)	11.879
SRR2967015	Control (Tissue:root)	8.867

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.398
SRR9715740	Leave	13.277
SRR9715741	Leave	4.874
SRR9715739	Root	7.409
SRR9715742	Root	10.730
SRR9715743	Root	11.362

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.351
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.961
SRR8400027	Control-Root	2.732