Gene detail information of Glyur001163s00025224.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G29540.22.00E-122bacterial transferase hexapeptide repeat-containing protein
NRKEH29431.10UDP-N-acetylglucosamine acyltransferase [Medicago truncatula]
COGYP_002247942.12.00E-56acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Thermodesulfovibrio yellowstonii DSM 11347]
Swissprottr|Q9SU91|LPXA_ARATH4.00E-163Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial (Precursor)
trEMBLtr|A0A072UJ42|A0A072UJ42_MEDTR0UDP-N-acetylglucosamine acyltransferase {ECO:0000313|EMBL:KEH29431.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011637021574382-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00677lpxA EC:2.3.1.129 Lipopolysaccharide biosynthesis map00540
Cationic antimicrobial peptide (CAMP) resistancemap01503


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001163s00025224.1PF00132.19Hexapep901237.90E-07
Glyur001163s00025224.1PF00132.19Hexapep1852191.10E-09
Glyur001163s00025224.1PF13720.1Acetyltransf_112563481.90E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.263
SRR1783600control6.244
SRR1783602moderate drought stress8.584
SRR1811619moderate drought stress8.431

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.930
DRR006520Root Summer glycyrrhizin high producing strain7.862
DRR006521Root Winter glycyrrhizin high producing strain8.890
DRR006522Root Winter glycyrrhizin high producing strain8.974
DRR006523Root Summer glycyrrhizin low producing strain7.868
DRR006524Root Summer glycyrrhizin low producing strain7.759
DRR006525Leaf Summer glycyrrhizin high producing strain6.816
DRR006526Leaf Summer glycyrrhizin high producing strain6.208

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.234
SRR2868004Drought Stress(Tissue:root)22.052
SRR2967015Control (Tissue:root)18.819

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.734
SRR9715740Leave8.528
SRR9715741Leave8.778
SRR9715739Root2.963
SRR9715742Root3.160
SRR9715743Root3.198

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.764
SRR8749028MeJA induced 9h14.012
SRR8749029MeJA induced 9h10.388
SRR8749030Uninduced5.912
SRR8749031Uninduced2.247
SRR8749032Uninduced3.493

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.757
SRR8400027Control-Root11.981

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved