Gene detail information of Glyur001164s00033504.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08630.42.00E-157threonine aldolase 1
NRXP_003590973.10L-allo-threonine aldolase [Medicago truncatula]
COGYP_005443407.12.00E-114putative threonine aldolase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q8RXU4|THA1_ARATH0Probable low-specificity L-threonine aldolase 1
trEMBLtr|G7I6S7|G7I6S7_MEDTR0L-allo-threonine aldolase-like protein {ECO:0000313|EMBL:AES61224.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011641080316543+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01620ltaE EC:4.1.2.48 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016829  lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001164s00033504.1PF01212.16Beta_elim_lyase73044.00E-83


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.968
SRR1783600control25.056
SRR1783602moderate drought stress18.394
SRR1811619moderate drought stress18.299

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.108
DRR006520Root Summer glycyrrhizin high producing strain29.457
DRR006521Root Winter glycyrrhizin high producing strain8.744
DRR006522Root Winter glycyrrhizin high producing strain8.445
DRR006523Root Summer glycyrrhizin low producing strain17.472
DRR006524Root Summer glycyrrhizin low producing strain17.841
DRR006525Leaf Summer glycyrrhizin high producing strain21.215
DRR006526Leaf Summer glycyrrhizin high producing strain21.164

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.243
SRR2868004Drought Stress(Tissue:root)55.875
SRR2967015Control (Tissue:root)37.439

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.573
SRR9715740Leave35.389
SRR9715741Leave18.500
SRR9715739Root5.527
SRR9715742Root9.346
SRR9715743Root9.371

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.237
SRR8749028MeJA induced 9h12.892
SRR8749029MeJA induced 9h6.854
SRR8749030Uninduced12.203
SRR8749031Uninduced14.425
SRR8749032Uninduced10.324

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.828
SRR8400027Control-Root40.689

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved