Gene detail information of Glyur001165s00032789.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G21710.11.00E-22DNA-directed RNA polymerase family protein
NRAAZ08455.12.92E-24RNA polymerase II second largest subunit [Camellia japonica]
COGYP_003541701.16.00E-09DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii DSM 5219]
Swissprottr|Q42877|RPB2_SOLLC5.00E-26DNA-directed RNA polymerase II subunit RPB2
trEMBLtr|B4XH56|B4XH56_SOYBN2.00E-24Putative RNA polymerase II second largest subunit {ECO:0000313|EMBL:ABX10786.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011657829381104-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03010RPB2, POLR2B EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020
Huntington's diseasemap05016
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

GO:0032549  ribonucleoside binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001165s00032789.1PF04565.11RNA_pol_Rpb2_327752.60E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.258
SRR1783600control0.427
SRR1783602moderate drought stress1.641
SRR1811619moderate drought stress1.492

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.374
DRR006520Root Summer glycyrrhizin high producing strain2.369
DRR006521Root Winter glycyrrhizin high producing strain2.791
DRR006522Root Winter glycyrrhizin high producing strain1.550
DRR006523Root Summer glycyrrhizin low producing strain1.571
DRR006524Root Summer glycyrrhizin low producing strain1.811
DRR006525Leaf Summer glycyrrhizin high producing strain2.338
DRR006526Leaf Summer glycyrrhizin high producing strain1.407

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.912
SRR2868004Drought Stress(Tissue:root)7.916
SRR2967015Control (Tissue:root)11.940

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.799
SRR9715740Leave1.989
SRR9715741Leave1.783
SRR9715739Root0.281
SRR9715742Root0.780
SRR9715743Root1.516

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.241
SRR8749028MeJA induced 9h12.105
SRR8749029MeJA induced 9h12.360
SRR8749030Uninduced15.322
SRR8749031Uninduced9.053
SRR8749032Uninduced13.847

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.490
SRR8400027Control-Root3.937

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved