Gene detail information of Glyur001166s00031657.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57620.1 | 2.00E-62 | myb domain protein 36 |
| NR | XP_007162775.1 | 2.15E-131 | hypothetical protein PHAVU_001G179400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M2Y9|RAX3_ARATH | 7.00E-70 | Transcription factor RAX3 |
| trEMBL | tr|V7CXD7|V7CXD7_PHAVU | 8.00E-132 | Uncharacterized protein {ECO:0000313|EMBL:ESW34769.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01166 | 41289 | 53427 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001166s00031657.1 | PF00249.26 | Myb_DNA-binding | 14 | 62 | 7.80E-14 |
| Glyur001166s00031657.1 | PF00249.26 | Myb_DNA-binding | 69 | 111 | 1.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.626 |
| SRR1783600 | control | 9.774 |
| SRR1783602 | moderate drought stress | 15.912 |
| SRR1811619 | moderate drought stress | 15.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.757 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.560 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.355 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.239 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.872 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.529 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.322 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.625 |
| SRR2967015 | Control (Tissue:root) | 21.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.545 |
| SRR9715740 | Leave | 0.969 |
| SRR9715741 | Leave | 0.779 |
| SRR9715739 | Root | 2.023 |
| SRR9715742 | Root | 3.236 |
| SRR9715743 | Root | 2.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.295 |
| SRR8749028 | MeJA induced 9h | 31.541 |
| SRR8749029 | MeJA induced 9h | 18.657 |
| SRR8749030 | Uninduced | 6.166 |
| SRR8749031 | Uninduced | 5.101 |
| SRR8749032 | Uninduced | 9.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.072 |
| SRR8400027 | Control-Root | 12.087 |