Gene detail information of Glyur001166s00031663.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36880.20methionine adenosyltransferase 3
NRKEH42171.10S-adenosylmethionine synthase-like protein [Medicago truncatula]
COGYP_008801702.14.00E-159S-adenosylmethionine synthetase [Exiguobacterium sp. MH3]
Swissprottr|Q6SYB9|METK2_TOBAC0S-adenosylmethionine synthase 2
trEMBLtr|A0A072VKL5|A0A072VKL5_MEDTR0S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011667940382850+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00789metK EC:2.5.1.6 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006556  S-adenosylmethionine biosynthetic process


molecular_function

GO:0004478  methionine adenosyltransferase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001166s00031663.1PF00438.15S-AdoMet_synt_N31013.40E-42
Glyur001166s00031663.1PF02772.11S-AdoMet_synt_M1162382.60E-49
Glyur001166s00031663.1PF02773.11S-AdoMet_synt_C2403822.10E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.943
SRR1783600control3.820
SRR1783602moderate drought stress3.893
SRR1811619moderate drought stress3.784

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.539
DRR006520Root Summer glycyrrhizin high producing strain6.697
DRR006521Root Winter glycyrrhizin high producing strain0.468
DRR006522Root Winter glycyrrhizin high producing strain0.587
DRR006523Root Summer glycyrrhizin low producing strain0.662
DRR006524Root Summer glycyrrhizin low producing strain0.661
DRR006525Leaf Summer glycyrrhizin high producing strain8.282
DRR006526Leaf Summer glycyrrhizin high producing strain8.476

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.020
SRR2868004Drought Stress(Tissue:root)8.966
SRR2967015Control (Tissue:root)9.686

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.107
SRR9715740Leave5.722
SRR9715741Leave2.700
SRR9715739Root3.202
SRR9715742Root2.852
SRR9715743Root3.668

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.180
SRR8749028MeJA induced 9h3.390
SRR8749029MeJA induced 9h3.970
SRR8749030Uninduced0.945
SRR8749031Uninduced0.596
SRR8749032Uninduced1.622

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.839
SRR8400027Control-Root10.057

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved