Gene detail information of Glyur001170s00029947.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19220.15.00E-176auxin response factor 19
NRXP_007152995.10hypothetical protein PHAVU_004G177600g [Phaseolus vulgaris]
Swissprottr|Q6Z2W3|ARFE_ORYSJ0Auxin response factor 5
trEMBLtr|V7C4C0|V7C4C0_PHAVU0Auxin response factor {ECO:0000256|RuleBase:RU004561}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011705527364978+


Gene family

Gene familysubfamily
Transcription Factors FamilyARF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009725  response to hormone


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001170s00029947.1PF02362.16B31652604.90E-17
Glyur001170s00029947.1PF06507.8Auxin_resp2853683.80E-36
Glyur001170s00029947.1PF02309.11AUX_IAA8558851.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.208
SRR1783600control30.481
SRR1783602moderate drought stress49.020
SRR1811619moderate drought stress49.236

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.512
DRR006520Root Summer glycyrrhizin high producing strain26.585
DRR006521Root Winter glycyrrhizin high producing strain22.354
DRR006522Root Winter glycyrrhizin high producing strain20.999
DRR006523Root Summer glycyrrhizin low producing strain32.955
DRR006524Root Summer glycyrrhizin low producing strain33.997
DRR006525Leaf Summer glycyrrhizin high producing strain24.000
DRR006526Leaf Summer glycyrrhizin high producing strain23.761

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.543
SRR2868004Drought Stress(Tissue:root)44.074
SRR2967015Control (Tissue:root)56.922

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.839
SRR9715740Leave20.095
SRR9715741Leave16.626
SRR9715739Root3.560
SRR9715742Root21.169
SRR9715743Root17.851

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h63.940
SRR8749028MeJA induced 9h35.719
SRR8749029MeJA induced 9h32.547
SRR8749030Uninduced13.579
SRR8749031Uninduced10.697
SRR8749032Uninduced12.544

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.624
SRR8400027Control-Root28.988

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved