Gene detail information of Glyur001171s00030964.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G22430.19.00E-44homeobox protein 6
NRKHN06556.13.44E-145Homeobox-leucine zipper protein ATHB-16 [Glycine soja]
Swissprottr|P46668|ATHB6_ARATH1.00E-60Homeobox-leucine zipper protein ATHB-6
trEMBLtr|V7CQT8|V7CQT8_PHAVU3.00E-133Uncharacterized protein {ECO:0000313|EMBL:ESW31703.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011714958752508-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001171s00030964.1PF00046.24Homeobox581111.80E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control292.606
SRR1783600control297.233
SRR1783602moderate drought stress299.495
SRR1811619moderate drought stress303.661

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain324.220
DRR006520Root Summer glycyrrhizin high producing strain322.546
DRR006521Root Winter glycyrrhizin high producing strain120.149
DRR006522Root Winter glycyrrhizin high producing strain119.048
DRR006523Root Summer glycyrrhizin low producing strain584.913
DRR006524Root Summer glycyrrhizin low producing strain579.917
DRR006525Leaf Summer glycyrrhizin high producing strain98.939
DRR006526Leaf Summer glycyrrhizin high producing strain98.548

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)340.936
SRR2868004Drought Stress(Tissue:root)302.139
SRR2967015Control (Tissue:root)442.178

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave257.956
SRR9715740Leave221.246
SRR9715741Leave266.583
SRR9715739Root180.184
SRR9715742Root377.919
SRR9715743Root339.527

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h100.602
SRR8749028MeJA induced 9h53.124
SRR8749029MeJA induced 9h103.101
SRR8749030Uninduced67.387
SRR8749031Uninduced16.552
SRR8749032Uninduced12.977

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root509.971
SRR8400027Control-Root442.264

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved