Gene detail information of Glyur001171s00030966.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72220.11.00E-32RING/U-box superfamily protein
NRKHN06554.11.36E-96E3 ubiquitin-protein ligase RING1 [Glycine soja]
Swissprottr|Q8LFY8|ATL54_ARATH1.00E-40RING-H2 finger protein ATL54
trEMBLtr|I1K4G5|I1K4G5_SOYBN3.00E-96Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30920.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011716429365234+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001171s00030966.1PF13639.1zf-RING_2961393.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.517
SRR1783600control49.295
SRR1783602moderate drought stress39.492
SRR1811619moderate drought stress38.969

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain170.758
DRR006520Root Summer glycyrrhizin high producing strain170.322
DRR006521Root Winter glycyrrhizin high producing strain1.185
DRR006522Root Winter glycyrrhizin high producing strain1.272
DRR006523Root Summer glycyrrhizin low producing strain294.403
DRR006524Root Summer glycyrrhizin low producing strain297.492
DRR006525Leaf Summer glycyrrhizin high producing strain14.827
DRR006526Leaf Summer glycyrrhizin high producing strain15.394

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.081
SRR2868004Drought Stress(Tissue:root)7.801
SRR2967015Control (Tissue:root)14.646

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.245
SRR9715740Leave28.106
SRR9715741Leave18.166
SRR9715739Root29.670
SRR9715742Root30.923
SRR9715743Root33.650

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h145.184
SRR8749028MeJA induced 9h48.033
SRR8749029MeJA induced 9h82.190
SRR8749030Uninduced16.011
SRR8749031Uninduced4.058
SRR8749032Uninduced8.840

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.192
SRR8400027Control-Root16.231

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved