Gene detail information of Glyur001176s00030757.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21060.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | KHN48493.1 | 0 | Retinoblastoma-binding protein 5 [Glycine soja] |
| COG | NP_927297.1 | 5.00E-10 | hypothetical protein gll4351 [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|Q39221|STLP2_ARATH | 7.00E-06 | SEC12-like protein 2 |
| trEMBL | tr|I1JW00|I1JW00_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G16100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01176 | 59523 | 63683 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001176s00030757.1 | PF00400.27 | WD40 | 28 | 51 | 0.0021 |
| Glyur001176s00030757.1 | PF00400.27 | WD40 | 67 | 95 | 0.00027 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.405 |
| SRR1783600 | control | 1.439 |
| SRR1783602 | moderate drought stress | 1.064 |
| SRR1811619 | moderate drought stress | 1.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.634 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.479 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.132 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.441 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.544 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.904 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.686 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.187 |
| SRR2967015 | Control (Tissue:root) | 2.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.861 |
| SRR9715740 | Leave | 0.409 |
| SRR9715741 | Leave | 0.623 |
| SRR9715739 | Root | 0.979 |
| SRR9715742 | Root | 0.626 |
| SRR9715743 | Root | 0.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.772 |
| SRR8749028 | MeJA induced 9h | 5.164 |
| SRR8749029 | MeJA induced 9h | 4.213 |
| SRR8749030 | Uninduced | 0.807 |
| SRR8749031 | Uninduced | 0.626 |
| SRR8749032 | Uninduced | 0.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.602 |
| SRR8400027 | Control-Root | 2.005 |