Gene detail information of Glyur001179s00026669.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50970.1 | 5.00E-180 | transducin family protein / WD-40 repeat family protein |
| NR | XP_003526921.1 | 0 | PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max] |
| COG | YP_007098581.1 | 4.00E-07 | WD40 repeat-containing protein [Chamaesiphon minutus PCC 6605] |
| trEMBL | tr|K7KVF3|K7KVF3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G17200.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01179 | 6007 | 10346 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001179s00026669.1 | PF00400.27 | WD40 | 471 | 492 | 0.07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.731 |
| SRR1783600 | control | 6.103 |
| SRR1783602 | moderate drought stress | 5.388 |
| SRR1811619 | moderate drought stress | 5.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.488 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.514 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.275 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.300 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.325 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.607 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.979 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.857 |
| SRR2967015 | Control (Tissue:root) | 17.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.403 |
| SRR9715740 | Leave | 11.413 |
| SRR9715741 | Leave | 9.278 |
| SRR9715739 | Root | 1.532 |
| SRR9715742 | Root | 8.185 |
| SRR9715743 | Root | 8.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.783 |
| SRR8749028 | MeJA induced 9h | 8.572 |
| SRR8749029 | MeJA induced 9h | 6.658 |
| SRR8749030 | Uninduced | 12.592 |
| SRR8749031 | Uninduced | 6.921 |
| SRR8749032 | Uninduced | 5.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.048 |
| SRR8400027 | Control-Root | 12.327 |