Gene detail information of Glyur001179s00026678.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G61840.10Exostosin family protein
NRXP_003526916.10PREDICTED: probable beta-1,4-xylosyltransferase IRX10L-like [Glycine max]
COGYP_677520.12.00E-06hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|Q940Q8|IX10L_ARATH0Probable beta-1,4-xylosyltransferase IRX10L
trEMBLtr|I1KBW3|I1KBW3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G17140.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011794721750314+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT47


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001179s00026678.1PF03016.10Exostosin813761.30E-75


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.641
SRR1783600control21.797
SRR1783602moderate drought stress19.497
SRR1811619moderate drought stress19.578

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.270
DRR006520Root Summer glycyrrhizin high producing strain21.036
DRR006521Root Winter glycyrrhizin high producing strain8.963
DRR006522Root Winter glycyrrhizin high producing strain8.551
DRR006523Root Summer glycyrrhizin low producing strain20.877
DRR006524Root Summer glycyrrhizin low producing strain20.391
DRR006525Leaf Summer glycyrrhizin high producing strain12.174
DRR006526Leaf Summer glycyrrhizin high producing strain12.306

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.632
SRR2868004Drought Stress(Tissue:root)44.754
SRR2967015Control (Tissue:root)48.475

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.570
SRR9715740Leave17.949
SRR9715741Leave16.773
SRR9715739Root14.736
SRR9715742Root21.278
SRR9715743Root19.872

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.452
SRR8749028MeJA induced 9h64.200
SRR8749029MeJA induced 9h52.918
SRR8749030Uninduced60.714
SRR8749031Uninduced69.636
SRR8749032Uninduced67.127

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.024
SRR8400027Control-Root33.416

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved