Gene detail information of Glyur001180s00029560.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70250.1 | 3.00E-106 | receptor serine/threonine kinase, putative |
| NR | KEH26990.1 | 0 | receptor-like kinase [Medicago truncatula] |
| COG | YP_001958461.1 | 5.00E-26 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q3ECH2|Y1670_ARATH | 1.00E-120 | Probable receptor-like protein kinase At1g67000 (Precursor) |
| trEMBL | tr|A0A072UMB2|A0A072UMB2_MEDTR | 0 | Receptor-like kinase {ECO:0000313|EMBL:KEH26990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01180 | 70477 | 71598 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.9.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001180s00029560.1 | PF00069.20 | Pkinase | 77 | 287 | 7.20E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.033 |
| SRR1783600 | control | 0.065 |
| SRR1783602 | moderate drought stress | 0.066 |
| SRR1811619 | moderate drought stress | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.394 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.294 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.249 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.309 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.891 |
| SRR2967015 | Control (Tissue:root) | 5.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.905 |
| SRR9715740 | Leave | 0.970 |
| SRR9715741 | Leave | 1.299 |
| SRR9715739 | Root | 0.133 |
| SRR9715742 | Root | 0.166 |
| SRR9715743 | Root | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.190 |
| SRR8749028 | MeJA induced 9h | 0.254 |
| SRR8749029 | MeJA induced 9h | 0.109 |
| SRR8749030 | Uninduced | 0.170 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.791 |
| SRR8400027 | Control-Root | 1.161 |