Gene detail

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Gene detail information of Glyur001180s00029563.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66920.1	7.00E-105	Protein kinase superfamily protein
NR	XP_004512903.1	0	PREDICTED: probable receptor-like protein kinase At1g67000-like isoform X2 [Cicer arietinum]
COG	YP_001958461.1	7.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	8.00E-107	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|K7LEN3\|K7LEN3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G31381.1}

Sequence

Transcript Sequence

>Glyur001180s00029563.1
ATGGATGACCATATCCATATCATCATCACCACCATCGTCATCTGTTTNATCTTGTTATTAACCACTTTGCCACAATCCCACTGTCAGTTACAACCACCACCGCAACAAATAACCCGTCACAATTATTTGATTTGTAAGGAGCAATTCTACAGCTGTGGTAACCTGTCCAACATCTCATATCCATTCTGGGGCGGAGACAGCCGACACAGACACTGTGGCGGCGGCGACCTATTCCACCTCCACTGCCACGGTGGCCAAAACGCTACCATTGGAATAGGGCCACAGAATTTCACAGTAATGAAGATTGACCCCGAAAGACACACCATGAGAATGGTGCGAACAGACCTTGCCCACGATGTGTGTTCCCCGCAATTCAGCGACACATACTTGATTCCCACTCTGTTCCGGTATTCCCCGAGTGTGAACAACATCACCATATTCTACAACTGTCCCTCTGACGTCATCGACCATGGCTACCCCATCTTCTGCAATAATGCTACCTCTCATCTNGGTACGAAAGATGAGGCGTTGGAAGCGTTTCCAGAGTTGAGGAGATGCGGGCGACATGTCCAAGTGCCGGTTCCTCTGGAGCCTGGAGTGGTACCAACTGGCCGTAANGTTGTGGAATTGGTTAGAGAAGAGGGGTTTGNGGTGGAGTATANTGTGGACCAGGAATGCACAAGATGCCTGGGAATTGAAGGACATTGCTGGAACAACAGCACTGATAATGATGATATTGAGCAACATGTNCAACGTTCCTGCTTTTACTCTTATTGCCCCGACGGATCTGCTACCACCACACACTGTTCTGCTGCTCACGAAAGTAAGCAAACTTGGAAAAGGAAAATCATTATAGGTGGTTTTGGTGCTGTTTACAAAGGAAAAATGCCCAATGGTTGCCATGTGGCTGTGAAGATATTGAATGCATCCAAAGGAAATGGTGAAGAATTCATCAANGAGGTTGCTAGCATTAGTAGAACNTCTCACGTTAATGTTGTCANCCTTGTTGGATTTTGTTTCGAAGNCCGNAAGAAAGCTCTCATCTATGAATTTATGCCCAATGGTTCCCTCGACAAATTTATTTACAACAAGGGACCCGAAACCATTGCATCACTGAGCTGGGAGAATCTGTATAAAATTGCCAAAGAGATAGCTCGAGGGCTGGAGTACTTGCATAGGGGATGTAACACTCAGATCTTGCATTTTGACATAAAACCACATAACATTCTTCTAGATGAGAATTTCAGTCCAAAGATATCAGATTTTGGGCTTGCAAAGCTTTGTCTCAGGAAAGAGAGCAGTGTTTCCATGTCAGATGCCAGAGGGACAATGGGGTATGTAGCTCCAGAGGTGTGGAATAGACATTTTGGAGGAGTCTCACACAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTAGAAATGGTGGGAGCAAGGAAAAACATTAATGCTGAAGCTAGTCACACAAGTGAGATATACTTTCCTCATTGGGTGTACAGCAGGCTTGAGCTAGGTAGTGATTTGAGACCTGATGTGGTGATGGCCACACAAGAAAATGAGATTGCCAGGAGAATGACCATTGTGGGTTTATGGTGCATTCAAACGCTTCCAAGTGATAGGCCTGCAATGAGTAGAGTGATTGATATGTTAGAAGGCAATGTGGATTCCCTAGAAATGCCACCAAAACCTTTGCTTTCTTCTCCTACTAGATCACTACCAGAGTCTTTCACTGCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01180	78267	81564	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001180s00029563.1	PF00069.20	Pkinase	281	490	2.30E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.042
SRR1783600	control	0.010
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.124
DRR006520	Root Summer glycyrrhizin high producing strain	0.141
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.240
DRR006524	Root Summer glycyrrhizin low producing strain	0.426
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.228
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.264

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.405
SRR2868004	Drought Stress(Tissue:root)	0.783
SRR2967015	Control (Tissue:root)	0.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.249
SRR9715740	Leave	1.284
SRR9715741	Leave	0.459
SRR9715739	Root	0.029
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.095
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.127
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.100

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.064
SRR8400027	Control-Root	0.122