Gene detail information of Glyur001182s00029381.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45360.1 | 3.00E-04 | F-box family protein |
| NR | NP_001235993.1 | 4.36E-97 | uncharacterized protein LOC100500296 [Glycine max] |
| trEMBL | tr|C6T1A4|C6T1A4_SOYBN | 2.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01182 | 20098 | 23751 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001182s00029381.1 | PF12937.2 | F-box-like | 2 | 45 | 1.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.433 |
| SRR1783600 | control | 7.101 |
| SRR1783602 | moderate drought stress | 10.818 |
| SRR1811619 | moderate drought stress | 10.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.614 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.392 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 49.312 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 48.391 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.817 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.972 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.929 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.327 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.186 |
| SRR2967015 | Control (Tissue:root) | 20.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 30.680 |
| SRR9715740 | Leave | 25.939 |
| SRR9715741 | Leave | 31.517 |
| SRR9715739 | Root | 0.989 |
| SRR9715742 | Root | 6.210 |
| SRR9715743 | Root | 5.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.175 |
| SRR8749028 | MeJA induced 9h | 28.838 |
| SRR8749029 | MeJA induced 9h | 23.246 |
| SRR8749030 | Uninduced | 25.136 |
| SRR8749031 | Uninduced | 50.737 |
| SRR8749032 | Uninduced | 27.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.405 |
| SRR8400027 | Control-Root | 24.301 |