Gene detail information of Glyur001182s00029386.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76390.27.00E-44ARM repeat superfamily protein
NRXP_003527992.10PREDICTED: U-box domain-containing protein 43-like isoform X1 [Glycine max]
COGYP_001957949.16.00E-12hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SFX2|PUB43_ARATH1.00E-56U-box domain-containing protein 43
trEMBLtr|K7KUU8|K7KUU8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G13730.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011825403158650+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001182s00029386.1PF04564.10U-box671331.40E-17
Glyur001182s00029386.1PF00514.18Arm3363751.90E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.443
SRR1783600control1.402
SRR1783602moderate drought stress0.874
SRR1811619moderate drought stress0.920

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.365
DRR006520Root Summer glycyrrhizin high producing strain1.355
DRR006521Root Winter glycyrrhizin high producing strain0.520
DRR006522Root Winter glycyrrhizin high producing strain0.542
DRR006523Root Summer glycyrrhizin low producing strain7.142
DRR006524Root Summer glycyrrhizin low producing strain7.240
DRR006525Leaf Summer glycyrrhizin high producing strain13.492
DRR006526Leaf Summer glycyrrhizin high producing strain13.854

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.973
SRR2868004Drought Stress(Tissue:root)14.049
SRR2967015Control (Tissue:root)8.994

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.233
SRR9715740Leave32.610
SRR9715741Leave60.320
SRR9715739Root2.231
SRR9715742Root13.076
SRR9715743Root9.890

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.061
SRR8749028MeJA induced 9h9.031
SRR8749029MeJA induced 9h5.883
SRR8749030Uninduced14.944
SRR8749031Uninduced8.078
SRR8749032Uninduced2.720

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.775
SRR8400027Control-Root4.740