Gene detail information of Glyur001184s00030523.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23250.1 | 7.00E-59 | myb domain protein 15 |
| NR | KEH23924.1 | 3.98E-129 | myb transcription factor [Medicago truncatula] |
| Swissprot | tr|Q7XBH4|MYB4_ORYSJ | 2.00E-77 | Myb-related protein Myb4 |
| trEMBL | tr|A0A072U2K6|A0A072U2K6_MEDTR | 1.00E-129 | Myb transcription factor {ECO:0000313|EMBL:KEH23924.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01184 | 16281 | 19357 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001184s00030523.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 7.90E-14 |
| Glyur001184s00030523.1 | PF00249.26 | Myb_DNA-binding | 67 | 112 | 1.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.783 |
| SRR1783600 | control | 0.813 |
| SRR1783602 | moderate drought stress | 0.564 |
| SRR1811619 | moderate drought stress | 0.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.698 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.163 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.867 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.483 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.267 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.888 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.004 |
| SRR2967015 | Control (Tissue:root) | 21.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.148 |
| SRR9715740 | Leave | 0.815 |
| SRR9715741 | Leave | 13.352 |
| SRR9715739 | Root | 1.852 |
| SRR9715742 | Root | 16.924 |
| SRR9715743 | Root | 18.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.520 |
| SRR8749028 | MeJA induced 9h | 11.255 |
| SRR8749029 | MeJA induced 9h | 6.494 |
| SRR8749030 | Uninduced | 45.006 |
| SRR8749031 | Uninduced | 2.403 |
| SRR8749032 | Uninduced | 8.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.167 |
| SRR8400027 | Control-Root | 6.837 |