Gene detail information of Glyur001186s00029877.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G38410.11.00E-47Ribulose bisphosphate carboxylase (small chain) family protein
NRKHN22693.15.45E-107Ribulose bisphosphate carboxylase small chain, chloroplastic [Glycine soja]
COGNP_682294.13.00E-34ribulose bisphosphate carboxylase small subunit [Thermosynechococcus elongatus BP-1]
Swissprottr|O64416|RBS_MARPA4.00E-66Ribulose bisphosphate carboxylase small chain, chloroplastic (Precursor)
trEMBLtr|I1LVQ6|I1LVQ6_SOYBN1.00E-106Ribulose bisphosphate carboxylase small chain {ECO:0000256|RuleBase:RU003627}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011861822319673+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01602rbcS EC:4.1.1.39 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001186s00029877.1PF00101.15RuBisCO_small581664.40E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control191.779
SRR1783600control192.585
SRR1783602moderate drought stress89.289
SRR1811619moderate drought stress88.700

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain153.470
DRR006520Root Summer glycyrrhizin high producing strain151.823
DRR006521Root Winter glycyrrhizin high producing strain167.439
DRR006522Root Winter glycyrrhizin high producing strain164.745
DRR006523Root Summer glycyrrhizin low producing strain217.588
DRR006524Root Summer glycyrrhizin low producing strain217.702
DRR006525Leaf Summer glycyrrhizin high producing strain2.045
DRR006526Leaf Summer glycyrrhizin high producing strain2.078

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)72.072
SRR2868004Drought Stress(Tissue:root)70.744
SRR2967015Control (Tissue:root)58.713

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.164
SRR9715740Leave1.788
SRR9715741Leave3.862
SRR9715739Root47.228
SRR9715742Root71.030
SRR9715743Root66.245

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h190.494
SRR8749028MeJA induced 9h192.741
SRR8749029MeJA induced 9h258.103
SRR8749030Uninduced78.785
SRR8749031Uninduced62.077
SRR8749032Uninduced93.434

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root173.625
SRR8400027Control-Root201.319

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved