Gene detail information of Glyur001186s00029884.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57360.1 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | NP_001235871.1 | 0 | clock-associated PAS protein ZEITLUPE 2 [Glycine max] |
| COG | YP_007114341.1 | 4.00E-21 | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q94BT6|ADO1_ARATH | 0 | Adagio protein 1 |
| trEMBL | tr|B9MST0|B9MST0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G00860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01186 | 59924 | 64196 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001186s00029884.1 | PF13426.1 | PAS_9 | 38 | 147 | 2.90E-17 |
| Glyur001186s00029884.1 | PF12937.2 | F-box-like | 209 | 245 | 3.10E-07 |
| Glyur001186s00029884.1 | PF13418.1 | Kelch_4 | 294 | 345 | 1.80E-12 |
| Glyur001186s00029884.1 | PF13415.1 | Kelch_3 | 358 | 406 | 2.60E-11 |
| Glyur001186s00029884.1 | PF13415.1 | Kelch_3 | 409 | 460 | 8.90E-07 |
| Glyur001186s00029884.1 | PF13418.1 | Kelch_4 | 517 | 569 | 1.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.624 |
| SRR1783600 | control | 5.657 |
| SRR1783602 | moderate drought stress | 6.945 |
| SRR1811619 | moderate drought stress | 6.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.453 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.978 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.799 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.443 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.978 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.749 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.222 |
| SRR2967015 | Control (Tissue:root) | 3.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.529 |
| SRR9715740 | Leave | 9.853 |
| SRR9715741 | Leave | 4.911 |
| SRR9715739 | Root | 2.398 |
| SRR9715742 | Root | 4.805 |
| SRR9715743 | Root | 4.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.303 |
| SRR8749028 | MeJA induced 9h | 1.839 |
| SRR8749029 | MeJA induced 9h | 0.950 |
| SRR8749030 | Uninduced | 1.009 |
| SRR8749031 | Uninduced | 0.495 |
| SRR8749032 | Uninduced | 0.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.555 |
| SRR8400027 | Control-Root | 7.678 |