Gene detail information of Glyur001187s00033310.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77120.1 | 6.00E-112 | alcohol dehydrogenase 1 |
| NR | XP_002526167.1 | 1.12E-164 | alcohol dehydrogenase, putative [Ricinus communis] |
| COG | YP_003147226.1 | 1.00E-100 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069] |
| Swissprot | tr|P48977|ADH_MALDO | 2.00E-163 | Alcohol dehydrogenase |
| trEMBL | tr|B9SJJ8|B9SJJ8_RICCO | 4.00E-165 | Alcohol dehydrogenase, putative {ECO:0000313|EMBL:EEF36243.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01187 | 8179 | 13547 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18857 | ADH1 | EC:1.1.1.1 | Glycolysis / Gluconeogenesis | map00010 |
| Fatty acid degradation | map00071 | |||
| alpha-Linolenic acid metabolism | map00592 | |||
| Tyrosine metabolism | map00350 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001187s00033310.1 | PF08240.7 | ADH_N | 32 | 136 | 2.20E-17 |
| Glyur001187s00033310.1 | PF00107.21 | ADH_zinc_N | 178 | 222 | 2.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.032 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.111 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.669 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.031 |
| SRR2967015 | Control (Tissue:root) | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.314 |
| SRR9715740 | Leave | 2.046 |
| SRR9715741 | Leave | 1.121 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.154 |
| SRR8400027 | Control-Root | 0.288 |