Gene detail information of Glyur001187s00033311.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15050.1 | 2.00E-90 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | NP_001242791.1 | 4.57E-160 | uncharacterized protein LOC100813028 precursor [Glycine max] |
| trEMBL | tr|C6TM69|C6TM69_SOYBN | 2.00E-160 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU24011.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01187 | 15812 | 21825 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001187s00033311.1 | PF02485.16 | Branch | 128 | 247 | 1.40E-26 |
| Glyur001187s00033311.1 | PF02485.16 | Branch | 263 | 336 | 2.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.180 |
| SRR1783600 | control | 3.781 |
| SRR1783602 | moderate drought stress | 2.797 |
| SRR1811619 | moderate drought stress | 2.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.315 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.373 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.647 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.523 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.092 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.673 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.224 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.090 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.385 |
| SRR2967015 | Control (Tissue:root) | 6.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.505 |
| SRR9715740 | Leave | 1.718 |
| SRR9715741 | Leave | 1.501 |
| SRR9715739 | Root | 2.158 |
| SRR9715742 | Root | 1.884 |
| SRR9715743 | Root | 2.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.720 |
| SRR8749028 | MeJA induced 9h | 5.327 |
| SRR8749029 | MeJA induced 9h | 3.315 |
| SRR8749030 | Uninduced | 4.337 |
| SRR8749031 | Uninduced | 2.234 |
| SRR8749032 | Uninduced | 2.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.609 |
| SRR8400027 | Control-Root | 8.010 |