Gene detail information of Glyur001187s00033315.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28840.14.00E-113XB3 ortholog 1 in Arabidopsis thaliana
NRKEH29076.10E3 ubiquitin-protein ligase XBAT31-like protein, partial [Medicago truncatula]
COGYP_006705297.13.00E-21Ankyrin 2,3/unc44 [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|Q94B55|XB31_ARATH9.00E-178Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|A0A072UHZ3|A0A072UHZ3_MEDTR0E3 ubiquitin-protein ligase XBAT31-like protein {ECO:0000313|EMBL:KEH29076.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011876351668821+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001187s00033315.1PF12796.2Ank_2291301.10E-14
Glyur001187s00033315.1PF13637.1Ank_41371961.40E-07
Glyur001187s00033315.1PF13857.1Ank_52012594.70E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.690
SRR1783600control16.534
SRR1783602moderate drought stress6.529
SRR1811619moderate drought stress6.766

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.062
DRR006520Root Summer glycyrrhizin high producing strain18.358
DRR006521Root Winter glycyrrhizin high producing strain115.572
DRR006522Root Winter glycyrrhizin high producing strain113.335
DRR006523Root Summer glycyrrhizin low producing strain44.884
DRR006524Root Summer glycyrrhizin low producing strain43.062
DRR006525Leaf Summer glycyrrhizin high producing strain6.841
DRR006526Leaf Summer glycyrrhizin high producing strain6.282

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.399
SRR2868004Drought Stress(Tissue:root)12.957
SRR2967015Control (Tissue:root)26.624

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.678
SRR9715740Leave1.327
SRR9715741Leave0.979
SRR9715739Root24.488
SRR9715742Root4.114
SRR9715743Root8.506

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.900
SRR8749028MeJA induced 9h38.514
SRR8749029MeJA induced 9h24.262
SRR8749030Uninduced16.971
SRR8749031Uninduced19.312
SRR8749032Uninduced21.174

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.492
SRR8400027Control-Root26.445

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved