Gene detail information of Glyur001191s00034542.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG00120.10ATP synthase subunit alpha
NRYP_009027279.10ATP synthase CF1 alpha subunit (chloroplast) [Glycyrrhiza glabra]
COGYP_007142336.10ATP synthase F1 subcomplex subunit alpha [Crinalium epipsammum PCC 9333]
Swissprottr|Q2PMS8|ATPA_SOYBN0ATP synthase subunit alpha, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01346}
trEMBLtr|A0A023I6Y2|A0A023I6Y2_GLYGL0ATP synthase subunit alpha, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000256|RuleBase:RU004286}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01191712721118-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02111ATPF1A, atpA EC:3.6.3.14 Oxidative phosphorylation map00190
Photosynthesismap00195


Gene Ontology

biological_process

GO:0015986  ATP synthesis coupled proton transport

GO:0015992  proton transport

GO:0046034  ATP metabolic process


cellular_component

GO:0045261  proton-transporting ATP synthase complex, catalytic core F(1)


molecular_function

GO:0005524  ATP binding

GO:0046933  proton-transporting ATP synthase activity, rotational mechanism

GO:0046961  proton-transporting ATPase activity, rotational mechanism

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001191s00034542.1PF02874.18ATP-synt_ab_N28934.00E-17
Glyur001191s00034542.1PF00006.20ATP-synt_ab1493655.20E-74
Glyur001191s00034542.1PF14227.1UBN2_24145225.50E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.095
SRR1783600control27.154
SRR1783602moderate drought stress23.762
SRR1811619moderate drought stress23.989

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.378
DRR006520Root Summer glycyrrhizin high producing strain37.738
DRR006521Root Winter glycyrrhizin high producing strain21.521
DRR006522Root Winter glycyrrhizin high producing strain20.456
DRR006523Root Summer glycyrrhizin low producing strain32.076
DRR006524Root Summer glycyrrhizin low producing strain32.737
DRR006525Leaf Summer glycyrrhizin high producing strain227.392
DRR006526Leaf Summer glycyrrhizin high producing strain227.906

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.609
SRR2868004Drought Stress(Tissue:root)1.123
SRR2967015Control (Tissue:root)0.887

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.270
SRR9715740Leave12.620
SRR9715741Leave21.486
SRR9715739Root43.322
SRR9715742Root5.709
SRR9715743Root12.789

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.983
SRR8749028MeJA induced 9h1.771
SRR8749029MeJA induced 9h1.040
SRR8749030Uninduced0.910
SRR8749031Uninduced0.508
SRR8749032Uninduced1.014

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.383
SRR8400027Control-Root0.323

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved