Gene detail

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Gene detail information of Glyur001193s00034836.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08680.2	8.00E-64	Leucine-rich repeat protein kinase family protein
NR	XP_003539259.2	0	PREDICTED: probable inactive receptor kinase At2g26730-like [Glycine max]
COG	YP_004775215.1	6.00E-12	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|O48788\|Y2267_ARATH	2.00E-103	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|K7LQN7\|K7LQN7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G22090.2}

Sequence

Transcript Sequence

>Glyur001193s00034836.1
ATGGACAAAACTACTTCTATCTGTGTGGTCATTGTGACATCCCTTCTCCTCCTTAACATGATTAGTTGTGTTGAGGATGAAGTCAAGAGAACGCTGATACAGTTCCTGGCACAACTCTCCGGCGAAAACCGCGGCCAACAGAATCCCAGTTTTGTTTGGAAACTGGATACTGATCCCTGCAAGGATCAATGGAAAGGTGTATACTGTGATGCTGCTCAAATCTCTGTAAAGAGGTTGTCTCTTGACGGGTTCAATTTGGGTGGAACTCTTGATGTTTCCATCCTTTGCAACTTGCAGCCCCTGGCTGCATCCCTCACTTTTCTCAGTCTTGATGGCAACAACATTAGTGGCGGGATAACTGCCGAGATTGGAAACTGCAGACAACTCACTCGCCTCCACCTAAGTGGAAATCGGCTTGCCGGTAACCTTCCTAGTTCACTTGCAATGTTAAACAATTTGAAGAGACTTGACATTTCGAACAACAAGTTTTTGGGACCGTTGCCTGAGTTGAACAGAATCTCAGGGCTGAATATGCTCCTTGCACAGAACAATCGCCTAAGTGGAATCATACCCGCATTTGATTTCTCCAATTTCGACCGATTCAATGTCTCCTTTAACAATTTCAGTGGCCTCATTCCAGATGTGCATGGTCATTTCGCCGCGGACAGCTTCCTTGGTAATCCGGAACTATGTGGAGAACCACTACAGAAGAATTGTTCTGGCCTGCCTCTGAGCAAAAGTGAGGCTGAGACATCAGAAGAAGAAGAATCAAAGGGTCCTTCTAAAGAGCAGATTCTTATGTACTCAGGCTATGCTGCATTGGGTGCTGTCTTAATCCTTTTTGTAGTCTTGAAGATTTGTAGAAGAAAGAAAAGAGGGAAGAAAATTGAAGTATTGAATAATGGTGGTGATATTGAGAAAGCAAGCTATGTTTCAAGTGAACAACACAAAGCAGAGATAATTAGCAGCAGATCTGAGTTTTCAACCACTTCTCATGAAAGTGGGGTGGTTTCACAATCGCTTGTAGTTCTTTCAAGGCCAGTGGTAAATGAATTGAAATTGGAGGAATTGCTGAGGGCACCTGCTGAATTGATTGGAAGAGGGAAGAATGGAAGTCTTTATAAGGTGATGCTTGCAAATAATGGGGTAACTGTGGTTGTGAAAAGGATCAAGGATTGGACTATTTCCAGCCTTGAATTCAAGCAAAGGATGCAGCTGTTGAGCCAAGCAAAGCACCCCCATGTACTGTCACCTCTAGCTTTCTATTGTTCCAGACAAGAGAAGCTTCTGGTCTATGAGTATCAGCAGAATGGAAGTTTATTCAAGCTTCTACATGGTACTGCAAAATCCTTTGACTGGACCAGCAGGCTTGGAATTGCAGCTACGATAGCCGAGACATTAGCTTTCATGCATGGAGAGCTTGGGCAACATGGTATTGTTCATGGTAATCTGAAATCCTCGAACATTTTGCTAAACAAAAACATGGAGCCGTGTATAAGTGAGTATGGTGCTATGGGTAAGGATGATCAACAAAATTCCCCTTTTGCCACTCCTCCTAATATTGCTTCTGCTGGTGGTGGTTCATTATTCAAGGGAGATGTTTATGGCTTTGGTGTAATTCTTCTTGAACTTCTTACTGGGAAGTTAGTGAAGAGTAATGGGATTGACTTGACTGATTGGGTTCAGTCAGTTGTAAGGGAAGAATGGACAGGTGAAGTCTTTGACAGGTGCTTACTGTCAGAGTATGCAAGTGAAGAGAGGATGGTCAATTTGCTACAGGTGGCTATAAGATGTGTCAATAGGTCCCCAGAGGCTAGGCCAAGTATGAACCAAGTTGCCCTCATGATTAACACCATCAAAGAGGAAGAGGAAAAATCCTTGATTTATGAGGTGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01193	60570	62932	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001193s00034836.1	PF12799.2	LRR_4	104	140	4.20E-07
Glyur001193s00034836.1	PF00560.28	LRR_1	152	169	0.71
Glyur001193s00034836.1	PF00069.20	Pkinase	363	612	2.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.113
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.058
DRR006524	Root Summer glycyrrhizin low producing strain	0.034
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.798
SRR2868004	Drought Stress(Tissue:root)	1.077
SRR2967015	Control (Tissue:root)	0.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.044
SRR8749030	Uninduced	0.067
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.238
SRR8400027	Control-Root	0.133