Gene detail information of Glyur001197s00032689.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G24470.21.00E-71GATA-type zinc finger protein with TIFY domain
NRXP_007141281.12.85E-161hypothetical protein PHAVU_008G182900g [Phaseolus vulgaris]
Swissprottr|Q9LRH6|GAT25_ARATH7.00E-88GATA transcription factor 25
trEMBLtr|V7B6S7|V7B6S7_PHAVU1.00E-161Uncharacterized protein {ECO:0000313|EMBL:ESW13275.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01197900113743+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001197s00032689.1PF06200.9tify851152.50E-13
Glyur001197s00032689.1PF06203.9CCT1501933.40E-16
Glyur001197s00032689.1PF00320.22GATA2182531.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.447
SRR1783600control19.355
SRR1783602moderate drought stress23.670
SRR1811619moderate drought stress23.270

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.359
DRR006520Root Summer glycyrrhizin high producing strain23.188
DRR006521Root Winter glycyrrhizin high producing strain15.116
DRR006522Root Winter glycyrrhizin high producing strain14.455
DRR006523Root Summer glycyrrhizin low producing strain21.254
DRR006524Root Summer glycyrrhizin low producing strain22.040
DRR006525Leaf Summer glycyrrhizin high producing strain13.672
DRR006526Leaf Summer glycyrrhizin high producing strain12.880

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.473
SRR2868004Drought Stress(Tissue:root)18.107
SRR2967015Control (Tissue:root)19.044

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.098
SRR9715740Leave19.256
SRR9715741Leave17.119
SRR9715739Root19.199
SRR9715742Root17.289
SRR9715743Root18.217

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.421
SRR8749028MeJA induced 9h14.718
SRR8749029MeJA induced 9h15.034
SRR8749030Uninduced8.741
SRR8749031Uninduced3.917
SRR8749032Uninduced4.761

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.319
SRR8400027Control-Root23.543

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved