Gene detail information of Glyur001200s00029484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55510.1 | 7.00E-166 | branched-chain alpha-keto acid decarboxylase E1 beta subunit |
| NR | XP_004506580.1 | 0 | PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cicer arietinum] |
| COG | YP_003913633.1 | 7.00E-143 | transketolase central region [Ferrimonas balearica DSM 9799] |
| Swissprot | tr|Q9SAV3|ODBB1_ARATH | 0 | 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (Precursor) |
| trEMBL | tr|G7JTF7|G7JTF7_MEDTR | 0 | Branched chain alpha-keto acid dehydrogenase E1 beta subunit {ECO:0000313|EMBL:AES87123.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01200 | 11133 | 21289 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00167 | BCKDHB, bkdA2 | EC:1.2.4.4 | Propanoate metabolism | map00640 |
| Valine, leucine and isoleucine degradation | map00280 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001200s00029484.1 | PF02779.19 | Transket_pyr | 113 | 200 | 5.20E-20 |
| Glyur001200s00029484.1 | PF02780.15 | Transketolase_C | 217 | 328 | 3.20E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.174 |
| SRR1783600 | control | 17.911 |
| SRR1783602 | moderate drought stress | 23.044 |
| SRR1811619 | moderate drought stress | 22.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.528 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.137 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.502 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.109 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.268 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.752 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 41.428 |
| SRR2868004 | Drought Stress(Tissue:root) | 61.938 |
| SRR2967015 | Control (Tissue:root) | 103.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.274 |
| SRR9715740 | Leave | 57.502 |
| SRR9715741 | Leave | 80.918 |
| SRR9715739 | Root | 7.221 |
| SRR9715742 | Root | 15.078 |
| SRR9715743 | Root | 11.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.382 |
| SRR8749028 | MeJA induced 9h | 36.751 |
| SRR8749029 | MeJA induced 9h | 14.728 |
| SRR8749030 | Uninduced | 27.129 |
| SRR8749031 | Uninduced | 30.636 |
| SRR8749032 | Uninduced | 22.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.083 |
| SRR8400027 | Control-Root | 34.289 |