Gene detail information of Glyur001201s00028276.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21470.1 | 7.00E-71 | riboflavin kinase/FMN hydrolase |
| NR | XP_003541887.1 | 0 | PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max] |
| COG | YP_720590.1 | 3.00E-39 | HAD family hydrolase [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q84MD8|FHYRK_ARATH | 6.00E-88 | Riboflavin kinase |
| trEMBL | tr|K7M2J5|K7M2J5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01201 | 35326 | 40070 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20884 | FHY | EC:2.7.1.26 3.1.3.102 | Riboflavin metabolism | map00740 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001201s00028276.1 | PF13419.1 | HAD_2 | 20 | 199 | 1.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.949 |
| SRR1783600 | control | 1.958 |
| SRR1783602 | moderate drought stress | 2.254 |
| SRR1811619 | moderate drought stress | 2.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.571 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.216 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.062 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.882 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.535 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.389 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.128 |
| SRR2967015 | Control (Tissue:root) | 11.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.924 |
| SRR9715740 | Leave | 0.692 |
| SRR9715741 | Leave | 0.964 |
| SRR9715739 | Root | 0.156 |
| SRR9715742 | Root | 1.045 |
| SRR9715743 | Root | 1.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.693 |
| SRR8749028 | MeJA induced 9h | 3.009 |
| SRR8749029 | MeJA induced 9h | 1.071 |
| SRR8749030 | Uninduced | 2.450 |
| SRR8749031 | Uninduced | 1.359 |
| SRR8749032 | Uninduced | 0.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.620 |
| SRR8400027 | Control-Root | 52.790 |