Gene detail information of Glyur001201s00028280.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58610.30ketol-acid reductoisomerase
NRXP_004487165.10PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cicer arietinum]
COGYP_003690422.10Ketol-acid reductoisomerase [Desulfurivibrio alkaliphilus AHT2]
Swissprottr|O82043|ILV5_PEA0Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBLtr|J7EPL5|J7EPL5_SOYBN0Ketol-acid reductoisomerase {ECO:0000256|PIRNR:PIRNR000118}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012015702460782-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00053ilvC EC:1.1.1.86 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0008652  cellular amino acid biosynthetic process

GO:0009082  branched-chain amino acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004455  ketol-acid reductoisomerase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001201s00028280.1PF07991.7IlvN1453191.10E-30
Glyur001201s00028280.1PF01450.14IlvC3274722.10E-16
Glyur001201s00028280.1PF01450.14IlvC4856114.10E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control153.847
SRR1783600control154.735
SRR1783602moderate drought stress186.573
SRR1811619moderate drought stress185.201

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain114.232
DRR006520Root Summer glycyrrhizin high producing strain112.971
DRR006521Root Winter glycyrrhizin high producing strain47.915
DRR006522Root Winter glycyrrhizin high producing strain46.506
DRR006523Root Summer glycyrrhizin low producing strain145.193
DRR006524Root Summer glycyrrhizin low producing strain143.720
DRR006525Leaf Summer glycyrrhizin high producing strain38.561
DRR006526Leaf Summer glycyrrhizin high producing strain38.762

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)226.126
SRR2868004Drought Stress(Tissue:root)163.961
SRR2967015Control (Tissue:root)166.906

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.772
SRR9715740Leave50.441
SRR9715741Leave40.687
SRR9715739Root123.943
SRR9715742Root150.365
SRR9715743Root144.566

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h172.533
SRR8749028MeJA induced 9h161.993
SRR8749029MeJA induced 9h127.381
SRR8749030Uninduced47.710
SRR8749031Uninduced22.091
SRR8749032Uninduced41.127

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root166.978
SRR8400027Control-Root156.296

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved