Gene detail information of Glyur001203s00034516.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G57820.10Zinc finger (C3HC4-type RING finger) family protein
NRKHN32473.10E3 ubiquitin-protein ligase ORTHRUS 2 [Glycine soja]
COGNP_295256.12.00E-28hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprottr|Q8VYZ0|ORTH2_ARATH0E3 ubiquitin-protein ligase ORTHRUS 2
trEMBLtr|I1LNN5|I1LNN5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G00330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012037030074678-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001203s00034516.1PF00097.20zf-C3HC41561942.10E-09
Glyur001203s00034516.1PF02182.12SAD_SRA2884392.40E-51
Glyur001203s00034516.1PF13923.1zf-C3HC4_25315873.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.318
SRR1783600control2.356
SRR1783602moderate drought stress1.028
SRR1811619moderate drought stress1.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.553
DRR006520Root Summer glycyrrhizin high producing strain1.598
DRR006521Root Winter glycyrrhizin high producing strain0.270
DRR006522Root Winter glycyrrhizin high producing strain0.319
DRR006523Root Summer glycyrrhizin low producing strain0.701
DRR006524Root Summer glycyrrhizin low producing strain0.637
DRR006525Leaf Summer glycyrrhizin high producing strain0.469
DRR006526Leaf Summer glycyrrhizin high producing strain0.468

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.281
SRR2868004Drought Stress(Tissue:root)3.661
SRR2967015Control (Tissue:root)3.860

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.932
SRR9715740Leave0.225
SRR9715741Leave0.473
SRR9715739Root1.607
SRR9715742Root1.020
SRR9715743Root1.125

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.352
SRR8749028MeJA induced 9h4.619
SRR8749029MeJA induced 9h5.207
SRR8749030Uninduced0.710
SRR8749031Uninduced0.112
SRR8749032Uninduced0.383

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.004
SRR8400027Control-Root4.752

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved