Gene detail information of Glyur001204s00024990.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10160.10DHFS-FPGS homolog C
NRXP_006574379.10PREDICTED: uncharacterized protein LOC100527932 isoform X1 [Glycine max]
COGYP_359198.16.00E-48folylpolyglutamate synthase [Carboxydothermus hydrogenoformans Z-2901]
Swissprottr|F4J2K2|FPGS2_ARATH0Folylpolyglutamate synthase {ECO:0000250|UniProtKB:Q05932, ECO:0000312|EMBL:CAC81075.1}
trEMBLtr|I1JGE2|I1JGE2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G34760.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012043167341486+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01930FPGS EC:6.3.2.17 Folate biosynthesis map00790
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009396  folic acid-containing compound biosynthetic process


molecular_function

GO:0004326  tetrahydrofolylpolyglutamate synthase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001204s00024990.3PF08245.7Mur_ligase_M1733794.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.355
SRR1783600control3.508
SRR1783602moderate drought stress2.739
SRR1811619moderate drought stress2.797

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.047
DRR006520Root Summer glycyrrhizin high producing strain4.073
DRR006521Root Winter glycyrrhizin high producing strain4.103
DRR006522Root Winter glycyrrhizin high producing strain4.039
DRR006523Root Summer glycyrrhizin low producing strain4.353
DRR006524Root Summer glycyrrhizin low producing strain4.327
DRR006525Leaf Summer glycyrrhizin high producing strain16.937
DRR006526Leaf Summer glycyrrhizin high producing strain16.876

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.312
SRR2868004Drought Stress(Tissue:root)7.726
SRR2967015Control (Tissue:root)9.510

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.309
SRR9715740Leave20.470
SRR9715741Leave16.493
SRR9715739Root0.470
SRR9715742Root1.920
SRR9715743Root1.887

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.146
SRR8749028MeJA induced 9h7.249
SRR8749029MeJA induced 9h6.232
SRR8749030Uninduced3.337
SRR8749031Uninduced2.085
SRR8749032Uninduced2.474

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.080
SRR8400027Control-Root7.240

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved