Gene detail information of Glyur001204s00024991.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41460.1 | 1.00E-160 | apurinic endonuclease-redox protein |
| NR | KHM99272.1 | 0 | Apurinic endonuclease-redox protein [Glycine soja] |
| COG | YP_007770464.1 | 5.00E-80 | exodeoxyribonuclease III [Coprococcus catus GD/7] |
| Swissprot | tr|P45951|ARP_ARATH | 0 | Apurinic endonuclease-redox protein |
| trEMBL | tr|K7K9G6|K7K9G6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G34700.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01204 | 42705 | 47865 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01142 | E3.1.11.2, xthA | EC:3.1.11.2 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001204s00024991.1 | PF02037.22 | SAP | 107 | 139 | 3.30E-06 |
| Glyur001204s00024991.1 | PF03372.18 | Exo_endo_phos | 296 | 537 | 6.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.579 |
| SRR1783600 | control | 3.492 |
| SRR1783602 | moderate drought stress | 3.443 |
| SRR1811619 | moderate drought stress | 3.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.977 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.575 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.027 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.880 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.467 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.168 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.260 |
| SRR2967015 | Control (Tissue:root) | 7.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.804 |
| SRR9715740 | Leave | 7.513 |
| SRR9715741 | Leave | 4.468 |
| SRR9715739 | Root | 0.614 |
| SRR9715742 | Root | 2.673 |
| SRR9715743 | Root | 2.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.091 |
| SRR8749028 | MeJA induced 9h | 5.615 |
| SRR8749029 | MeJA induced 9h | 4.307 |
| SRR8749030 | Uninduced | 3.753 |
| SRR8749031 | Uninduced | 2.382 |
| SRR8749032 | Uninduced | 2.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.295 |
| SRR8400027 | Control-Root | 7.569 |