Gene detail information of Glyur001204s00024993.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41500.12.00E-143WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
NRXP_003519096.10PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like isoform X1 [Glycine max]
COGYP_003300732.12.00E-53metallophosphoesterase [Thermomonospora curvata DSM 43183]
Swissprottr|O22212|PRP4L_ARATH0U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|I1JGD6|I1JGD6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G34620.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012045377057261-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0008380  RNA splicing


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001204s00024993.1PF08799.6PRP41521811.80E-12
Glyur001204s00024993.1PF00400.27WD402582959.90E-08
Glyur001204s00024993.1PF00400.27WD402983362.00E-08
Glyur001204s00024993.1PF00400.27WD403473784.00E-07
Glyur001204s00024993.1PF00400.27WD403864203.60E-11
Glyur001204s00024993.1PF00400.27WD404254632.00E-05
Glyur001204s00024993.1PF00400.27WD404685053.30E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.110
SRR1783600control14.069
SRR1783602moderate drought stress17.571
SRR1811619moderate drought stress17.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.802
DRR006520Root Summer glycyrrhizin high producing strain20.517
DRR006521Root Winter glycyrrhizin high producing strain20.233
DRR006522Root Winter glycyrrhizin high producing strain20.047
DRR006523Root Summer glycyrrhizin low producing strain19.411
DRR006524Root Summer glycyrrhizin low producing strain19.054
DRR006525Leaf Summer glycyrrhizin high producing strain9.605
DRR006526Leaf Summer glycyrrhizin high producing strain9.764

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.176
SRR2868004Drought Stress(Tissue:root)20.545
SRR2967015Control (Tissue:root)21.894

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.703
SRR9715740Leave16.698
SRR9715741Leave17.057
SRR9715739Root15.870
SRR9715742Root20.155
SRR9715743Root19.799

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.563
SRR8749028MeJA induced 9h16.010
SRR8749029MeJA induced 9h14.388
SRR8749030Uninduced9.326
SRR8749031Uninduced4.425
SRR8749032Uninduced7.927

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.613
SRR8400027Control-Root23.447

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved