Gene detail information of Glyur001207s00025858.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04680.23.00E-153CLP-similar protein 3
NRXP_003536785.10PREDICTED: protein CLP1 homolog [Glycine max]
COGYP_001013795.16.00E-12hypothetical protein Hbut_1636 [Hyperthermus butylicus DSM 5456]
Swissprottr|Q9SR06|CLP1_ARATH0Protein CLP1 homolog {ECO:0000255|HAMAP-Rule:MF_03035}
trEMBLtr|I1LFF7|I1LFF7_SOYBN0Protein CLP1 homolog {ECO:0000256|HAMAP-Rule:MF_03035}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012071069415735-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14399CLP1, HERB EC:2.7.1.78 mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0031124  mRNA 3'-end processing


cellular_component

GO:0005849  mRNA cleavage factor complex


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001207s00025858.1PF03205.9MobB1292443.40E-23
Glyur001207s00025858.1PF06807.9Clp12464391.10E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.707
SRR1783600control8.596
SRR1783602moderate drought stress10.652
SRR1811619moderate drought stress10.740

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.975
DRR006520Root Summer glycyrrhizin high producing strain19.250
DRR006521Root Winter glycyrrhizin high producing strain12.312
DRR006522Root Winter glycyrrhizin high producing strain11.867
DRR006523Root Summer glycyrrhizin low producing strain16.188
DRR006524Root Summer glycyrrhizin low producing strain16.223
DRR006525Leaf Summer glycyrrhizin high producing strain5.214
DRR006526Leaf Summer glycyrrhizin high producing strain5.407

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.262
SRR2868004Drought Stress(Tissue:root)20.028
SRR2967015Control (Tissue:root)23.126

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.500
SRR9715740Leave18.063
SRR9715741Leave14.349
SRR9715739Root12.659
SRR9715742Root16.159
SRR9715743Root13.940

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.290
SRR8749028MeJA induced 9h7.869
SRR8749029MeJA induced 9h7.868
SRR8749030Uninduced2.585
SRR8749031Uninduced0.716
SRR8749032Uninduced0.941

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.806
SRR8400027Control-Root29.675

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved