Gene detail information of Glyur001207s00025866.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45290.10Transketolase
NRXP_007142668.10hypothetical protein PHAVU_007G006600g [Phaseolus vulgaris]
COGYP_007110498.10transketolase [Geitlerinema sp. PCC 7407]
Swissprottr|F4IW47|TKTC2_ARATH0Transketolase-2, chloroplastic (Precursor)
trEMBLtr|V7B9W8|V7B9W8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW14662.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012075257657574+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00615E2.2.1.1, tktA, tktB EC:2.2.1.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710
Biosynthesis of ansamycinsmap01051


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004802  transketolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001207s00025866.1PF00456.16Transketolase_N854041.10E-138
Glyur001207s00025866.1PF02779.19Transket_pyr4225923.90E-44
Glyur001207s00025866.1PF02780.15Transketolase_C6167231.90E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.527
SRR1783600control0.523
SRR1783602moderate drought stress0.583
SRR1811619moderate drought stress0.620

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.803
DRR006520Root Summer glycyrrhizin high producing strain0.867
DRR006521Root Winter glycyrrhizin high producing strain0.211
DRR006522Root Winter glycyrrhizin high producing strain0.176
DRR006523Root Summer glycyrrhizin low producing strain1.479
DRR006524Root Summer glycyrrhizin low producing strain1.377
DRR006525Leaf Summer glycyrrhizin high producing strain515.698
DRR006526Leaf Summer glycyrrhizin high producing strain510.632

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.558
SRR2868004Drought Stress(Tissue:root)18.333
SRR2967015Control (Tissue:root)9.480

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave388.608
SRR9715740Leave487.198
SRR9715741Leave348.636
SRR9715739Root0.678
SRR9715742Root0.774
SRR9715743Root1.155

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.776
SRR8749028MeJA induced 9h2.510
SRR8749029MeJA induced 9h2.418
SRR8749030Uninduced0.534
SRR8749031Uninduced0.061
SRR8749032Uninduced0.599

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.982
SRR8400027Control-Root27.098

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved