Gene detail information of Glyur001207s00025868.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50480.1010-formyltetrahydrofolate synthetase
NRXP_003556553.10PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max]
COGYP_005442361.10formate--tetrahydrofolate ligase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|P28723|FTHS_SPIOL0Formate--tetrahydrofolate ligase
trEMBLtr|I1NJ85|I1NJ85_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38740.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012076137665994-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01938fhs EC:6.3.4.3 Carbon metabolism map01200
Carbon fixation pathways in prokaryotesmap00720
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0009396  folic acid-containing compound biosynthetic process


molecular_function

GO:0004329  formate-tetrahydrofolate ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001207s00025868.1PF01268.14FTHFS186371.60E-250


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.474
SRR1783600control42.005
SRR1783602moderate drought stress36.222
SRR1811619moderate drought stress36.257

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.886
DRR006520Root Summer glycyrrhizin high producing strain32.468
DRR006521Root Winter glycyrrhizin high producing strain37.814
DRR006522Root Winter glycyrrhizin high producing strain36.883
DRR006523Root Summer glycyrrhizin low producing strain19.586
DRR006524Root Summer glycyrrhizin low producing strain19.724
DRR006525Leaf Summer glycyrrhizin high producing strain33.811
DRR006526Leaf Summer glycyrrhizin high producing strain33.495

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.800
SRR2868004Drought Stress(Tissue:root)56.671
SRR2967015Control (Tissue:root)52.107

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.603
SRR9715740Leave46.673
SRR9715741Leave44.272
SRR9715739Root42.766
SRR9715742Root67.194
SRR9715743Root65.741

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.096
SRR8749028MeJA induced 9h33.883
SRR8749029MeJA induced 9h16.157
SRR8749030Uninduced16.900
SRR8749031Uninduced11.233
SRR8749032Uninduced10.749

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root82.764
SRR8400027Control-Root84.243

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved