Gene detail

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Gene detail information of Glyur001207s00025872.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04880.1	6.00E-113	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
NR	XP_004497360.1	0	PREDICTED: high mobility group B protein 15-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9MAT6\|HMG15_ARATH	1.00E-137	High mobility group B protein 15
trEMBL	tr\|K7LM49\|K7LM49_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G44041.2}

Sequence

Transcript Sequence

>Glyur001207s00025872.1
GTGTGGTTTTCAACTTCCTTTTTTGGTGTTTTTTCTTCCTCCTTTGCTTCTTTGTTTTTTGTTTGTTTTTTCACCTCTCTGTAATGCTGCTAAATGTTGAGGTCGTTGTCTTGTTGGTGGTCGGGCAGGAAAATACTGAAGGCTAAAAAAGTACCAAGTTGTGAATGGCATCAACATCTTGTGTCAGTAAGAGCCCATTACCCATGAAAGAGGGAGCTTCAAGCTATCGTCCATATCCTGAACCTCAAGCAAAATATGAAGAGATTGCAGACAATCCCAAGCTCTTCATGGATACCTTGGAGAAGCTCCATGCCGATATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAACTGGATTTACACCNCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGTTTGCCAAAATCATTAGAGAGAGAAAATGGAAAGATATAACTTCCGTTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTACTATTTTAAAGCTCATGGATGGACCCCCAACACTTCTGATCCTTTGCAGNGTCAATCAACCATGCCAGTTCCTGTTCCAAAGACGCAGTTTTTGCAGCCTCCATTGGGAATTCAACCAGCTGTCTTTCAACAGTTAAATGTTAATGCTGCTAAATTCCCTCAAGCAATGGCATCCTCTTCCACAGGGTCTCCAGTCGTTGGGGTCATTGATGGGAAATTTGAAGGCGGATATCTAGTTACAGTCACAATAGGTTCGGAGAAACTCAAAGGGGTTCTTTATCAGGCTCCACAAAGTTCTTTATTGCCCGCATCCCATCATAATGCTTTTGCTAACAACGACAATGCATCTGCTCCACCGGGTGTCCATCGTCGCCGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGATACAATTTCTTTTTTGCAGAACAGCATGCAAGGCTAAAGCCTCTTCACCAAGGGAAGGACAGGGAGATCAGTAGGATGATTGGTGAACTCTGGAACAAGTTGAATGAATCNGAAAAGGCGGTTTATCAAGATAAAGCCATGAAGGACAAAGAGAGGTACAGAGCAGAAATGGAGGATTATCGGGAGAGACTGAAGATGGGCCAAGTCATCAGCCACGCCGTGCCACTTCAACAGCGACTTCCCGAACCGGATACTGACATGTTGGATGCTGACATGAAATTGGATGAAGCCGGCGGGGCAGATTCTCCTCAGACTCCGGAGGAGAGCAGTTCCGGAGGAAGTGACTACGAAGATGATAAAGCCACGGAGAAAGATTCCGATGTGGATGCATTGCCTGTTATGGGATTGGGTGCTGAATCTAGCTGTTTTGGTTCAGAAGAGAAGTCATCCAAGGGGGGTTTATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01207	71983	75303	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001207s00025872.1	PF01388.16	ARID	37	122	2.70E-18
Glyur001207s00025872.1	PF00505.14	HMG_box	265	332	1.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.298
SRR1783600	control	0.318
SRR1783602	moderate drought stress	0.581
SRR1811619	moderate drought stress	0.579

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.002
DRR006520	Root Summer glycyrrhizin high producing strain	1.221
DRR006521	Root Winter glycyrrhizin high producing strain	2.208
DRR006522	Root Winter glycyrrhizin high producing strain	2.214
DRR006523	Root Summer glycyrrhizin low producing strain	1.633
DRR006524	Root Summer glycyrrhizin low producing strain	1.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.398
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.399

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.710
SRR2868004	Drought Stress(Tissue:root)	9.651
SRR2967015	Control (Tissue:root)	8.494

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.654
SRR9715740	Leave	30.993
SRR9715741	Leave	20.502
SRR9715739	Root	0.053
SRR9715742	Root	1.044
SRR9715743	Root	0.343

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.089
SRR8749028	MeJA induced 9h	28.301
SRR8749029	MeJA induced 9h	17.092
SRR8749030	Uninduced	12.543
SRR8749031	Uninduced	31.543
SRR8749032	Uninduced	17.457

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.858
SRR8400027	Control-Root	2.721