Gene detail information of Glyur001208s00036577.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G26830.10cullin 3
NRXP_004511215.10PREDICTED: cullin-3A-like [Cicer arietinum]
Swissprottr|Q9ZVH4|CUL3A_ARATH0Cullin-3A
trEMBLtr|V7C8A0|V7C8A0_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW25593.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012082519429309-


Gene family

Gene familysubfamily
Ubiquitin FamilyCullin


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


cellular_component

GO:0031461  cullin-RING ubiquitin ligase complex


molecular_function

GO:0031625  ubiquitin protein ligase binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001208s00036577.1PF00888.17Cullin296312.30E-187
Glyur001208s00036577.1PF10557.4Cullin_Nedd86597251.10E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.183
SRR1783600control23.234
SRR1783602moderate drought stress16.576
SRR1811619moderate drought stress16.528

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.090
DRR006520Root Summer glycyrrhizin high producing strain35.726
DRR006521Root Winter glycyrrhizin high producing strain20.054
DRR006522Root Winter glycyrrhizin high producing strain19.398
DRR006523Root Summer glycyrrhizin low producing strain34.738
DRR006524Root Summer glycyrrhizin low producing strain34.781
DRR006525Leaf Summer glycyrrhizin high producing strain20.153
DRR006526Leaf Summer glycyrrhizin high producing strain20.145

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.985
SRR2868004Drought Stress(Tissue:root)35.363
SRR2967015Control (Tissue:root)32.629

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.844
SRR9715740Leave19.937
SRR9715741Leave28.194
SRR9715739Root2.433
SRR9715742Root13.745
SRR9715743Root12.914

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h69.247
SRR8749028MeJA induced 9h59.119
SRR8749029MeJA induced 9h83.129
SRR8749030Uninduced85.736
SRR8749031Uninduced140.382
SRR8749032Uninduced124.387

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.993
SRR8400027Control-Root23.289

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved