Gene detail information of Glyur001212s00044886.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 1.00E-17 | F-box and associated interaction domains-containing protein |
| NR | XP_003553895.1 | 0 | PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 5.00E-13 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|K7MX79|K7MX79_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G23910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01212 | 70758 | 72822 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001212s00044886.1 | PF12937.2 | F-box-like | 2 | 38 | 2.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.836 |
| SRR1783600 | control | 36.490 |
| SRR1783602 | moderate drought stress | 50.504 |
| SRR1811619 | moderate drought stress | 49.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.965 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.312 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 55.036 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 54.441 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.059 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.353 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.544 |
| SRR2967015 | Control (Tissue:root) | 10.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.326 |
| SRR9715740 | Leave | 6.377 |
| SRR9715741 | Leave | 7.326 |
| SRR9715739 | Root | 18.863 |
| SRR9715742 | Root | 17.285 |
| SRR9715743 | Root | 17.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.676 |
| SRR8749028 | MeJA induced 9h | 25.723 |
| SRR8749029 | MeJA induced 9h | 7.554 |
| SRR8749030 | Uninduced | 7.907 |
| SRR8749031 | Uninduced | 55.539 |
| SRR8749032 | Uninduced | 35.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.161 |
| SRR8400027 | Control-Root | 20.875 |