Gene detail information of Glyur001213s00027156.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23540.16.00E-160Mov34/MPN/PAD-1 family protein
NRXP_007160833.10hypothetical protein PHAVU_001G020400g [Phaseolus vulgaris]
COGYP_008797954.14.00E-1726S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9LT08|PSDE_ARATH026S proteasome non-ATPase regulatory subunit 14 homolog
trEMBLtr|V7CRL4|V7CRL4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW32827.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012134445248288+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001213s00027156.2PF01398.16JAB301411.30E-34
Glyur001213s00027156.2PF13012.1MitMem_reg1752986.30E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.417
SRR1783600control19.514
SRR1783602moderate drought stress16.876
SRR1811619moderate drought stress17.077

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.418
DRR006520Root Summer glycyrrhizin high producing strain54.527
DRR006521Root Winter glycyrrhizin high producing strain57.290
DRR006522Root Winter glycyrrhizin high producing strain55.870
DRR006523Root Summer glycyrrhizin low producing strain43.506
DRR006524Root Summer glycyrrhizin low producing strain44.168
DRR006525Leaf Summer glycyrrhizin high producing strain26.136
DRR006526Leaf Summer glycyrrhizin high producing strain25.526

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)101.657
SRR2868004Drought Stress(Tissue:root)88.990
SRR2967015Control (Tissue:root)78.753

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.416
SRR9715740Leave47.893
SRR9715741Leave46.990
SRR9715739Root30.466
SRR9715742Root40.504
SRR9715743Root38.174

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h127.199
SRR8749028MeJA induced 9h70.537
SRR8749029MeJA induced 9h94.068
SRR8749030Uninduced50.712
SRR8749031Uninduced37.599
SRR8749032Uninduced53.141

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root87.046
SRR8400027Control-Root86.371

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved