Gene detail

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Gene detail information of Glyur001214s00026370.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29630.2	0	5'-3' exonuclease family protein
NR	XP_006585181.1	0	PREDICTED: exonuclease 1-like isoform X1 [Glycine max]
COG	YP_001539884.1	2.00E-17	flap endonuclease-1 [Caldivirga maquilingensis IC-167]
Swissprot	tr\|Q8L6Z7\|EXO1_ARATH	0	Exonuclease 1
trEMBL	tr\|K7L666\|K7L666_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G12770.2}

Sequence

Transcript Sequence

>Glyur001214s00026370.3
ATGGGAATACAGGGTCTATTGCCGCAACTGAAGTCGATAATGGTCCCAATCCACATCAGGGACTTGCAGGGTTGTTCCGTGGCGATCGACACCTATTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGACCTCTGCAAAGGAATACCCACCACTAGGCACATTGAGTATTGCATGCACAGNGTAAATTTGCTGCGCCACTTTGGTGTTAAGCCTATTCTAGTATTCGATGGAGGTCTTCTACCAATGAAGATTGAACAAGAGAACAAGCGTGCCAGGGTTAGAAAGGATAATCTTGCACGTGCAGTTGAACATGAATCAGATGGGAATTCTACTGCTGCCTATGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTGGTTGCGCGTGAACTAATTCAGGTATTGAAGCAGGAAAATGTGCATTATATTGTTGCTCCTTACGAAGCAGATGCCCAGATGACATTCTTGGCAATTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTCATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTCCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAANGGCCCATGCAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTACCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATTCTTACTTTCCAACATCAACGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTGATATACCTGACGACATTGACACACCGTTGCCAAAACATATAGCACAAGGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAGAATCTCGTTGCCAGATTGGAAACTGCGGGAACTTATCAGTTCAAAACTCTTCATACCGAACGTGCAAAGAGAAAGATTGATCTGCCTGTGCAGAAGAATCTCTTGACCAAGAAATTCGTAGCACCTCGGACATCACCTACTACTGCTATTCAAAGTACATTGATCTCCTCTTCTGTCTGTTCCCTGGAACATGAGACTTCAGAAGCTGCTGCTAGTGAAACAAAAAACTCTGCTGCATCCATAGTTGACTCCGAGAATTGTGGCAGCGACCCTCCTCCTAATAGCTATATTGAGAACAGTTTTGCCACCGAAACTTCAGAGTTTATAGAATNTCCATGTCATGTATCTATGGTGGGTGAGAAGAGAAGTCCTGAACATACAATACTGAGACAGCCCAGGCAGCCAATTCATAAACCTTGTCTGGTGTTGCATAAGGAGCATGAGCACACGAATGTCGAAGAAGAAGTTGAAGGAAAAACCAGGGAGGCAACAAGAAAGGTAACTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAAGAATGCTTGTGACGAGAAACAAGACCAACTGTCCTCTGGCATTGTCATTGATGAGAGAGAAAGTGCCATATCTGACAGTGATTTATGTAACAATCATTCGAAGAATAAAGACTTGAAAAGGAAGGAAAACTTGCAGCCCAGGGAGGCAACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAACAATGCTTGTGACGAGAAACAAGATCGACTGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGCCACATCTGACAGTGATTTGTGTAACAACCATTTGAAGAATAAAGACTTGAAAAGGAAGGTTTCCCCTAATGACAGTATTCAAAGTGAAAACTTGCAGCCCAGGCAAATGCATCCTACTTCATCTACTCATAATAATGAGAATAATGCCGAAGAAGTAAAATTTGGCACAAACATTTCCCATGTAGGCCATTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGAATCTGTATTGTCATCTTTTAGATACACTGGCTCTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCACAACACTCATAATAATAGGCCAACAGCTGTGGACTTCAGTCAATATGAATATGTGCCAAAACAAACAAAGACTAGCAGAATAGCTCCTGGGAATTCATTGAAGTCGTTCAAGCAGAACTTTACTTGATTGAAGTTTATGTCATCGTCTGAACAACATTCTGCCCTAGCCATGACCAATATTGGGTTAATTCTTCTTTGGCAGCTGGAAATTGTATTCTTGATCTAACCACTCATTTACTTGGGAATCAGTTATCTTGTGTTCCTTCATTTAATACCAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01214	18607	24104	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10746	EXO1	EC:3.1.-.-	Mismatch repair	map03430

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function GO:0003677 DNA binding GO:0003824 catalytic activity GO:0004518 nuclease activity GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001214s00026370.3	PF00752.12	XPG_N	1	98	9.20E-22
Glyur001214s00026370.3	PF00867.13	XPG_I	139	226	2.70E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.701
SRR1783600	control	0.692
SRR1783602	moderate drought stress	0.466
SRR1811619	moderate drought stress	0.456

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.123
DRR006520	Root Summer glycyrrhizin high producing strain	1.152
DRR006521	Root Winter glycyrrhizin high producing strain	0.476
DRR006522	Root Winter glycyrrhizin high producing strain	0.533
DRR006523	Root Summer glycyrrhizin low producing strain	0.380
DRR006524	Root Summer glycyrrhizin low producing strain	0.420
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.591
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.984
SRR2868004	Drought Stress(Tissue:root)	2.176
SRR2967015	Control (Tissue:root)	2.271

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.297
SRR9715740	Leave	0.462
SRR9715741	Leave	0.978
SRR9715739	Root	0.000
SRR9715742	Root	0.281
SRR9715743	Root	0.346

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.706
SRR8749028	MeJA induced 9h	2.019
SRR8749029	MeJA induced 9h	2.177
SRR8749030	Uninduced	0.548
SRR8749031	Uninduced	0.280
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.023
SRR8400027	Control-Root	1.677