Gene detail information of Glyur001216s00037799.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.17.00E-149Chalcone and stilbene synthase family protein
NRXP_007137487.10hypothetical protein PHAVU_009G131000g [Phaseolus vulgaris]
COGYP_004643652.16.00E-40chalcone and stilbene synthase domain-containing protein [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q9SBL5|CHS4_SORBI0Chalcone synthase 4
trEMBLtr|V7AZ15|V7AZ15_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW09481.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012165469056658+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001216s00037799.1PF00195.14Chal_sti_synt_N412051.20E-80
Glyur001216s00037799.1PF02797.10Chal_sti_synt_C2163642.50E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.179
SRR1783600control2.275
SRR1783602moderate drought stress7.086
SRR1811619moderate drought stress7.119

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.416
DRR006520Root Summer glycyrrhizin high producing strain2.074
DRR006521Root Winter glycyrrhizin high producing strain2.072
DRR006522Root Winter glycyrrhizin high producing strain1.823
DRR006523Root Summer glycyrrhizin low producing strain3.280
DRR006524Root Summer glycyrrhizin low producing strain3.140
DRR006525Leaf Summer glycyrrhizin high producing strain5.908
DRR006526Leaf Summer glycyrrhizin high producing strain5.605

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.866
SRR2868004Drought Stress(Tissue:root)0.565
SRR2967015Control (Tissue:root)1.135

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.807
SRR9715740Leave2.501
SRR9715741Leave12.166
SRR9715739Root0.560
SRR9715742Root1.053
SRR9715743Root1.022

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.055
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.039

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.755
SRR8400027Control-Root1.005

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved