Gene detail information of Glyur001218s00032868.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55140.13.00E-99Pectin lyase-like superfamily protein
NRXP_008241679.12.23E-143PREDICTED: probable pectate lyase 4 [Prunus mume]
COGYP_003976318.12.00E-31pectate lyase family protein [Achromobacter xylosoxidans A8]
Swissprottr|Q9C8G4|PLY4_ARATH1.00E-33Probable pectate lyase 4 (Precursor)
trEMBLtr|K7LHG1|K7LHG1_SOYBN2.00E-145Pectate lyase {ECO:0000256|RuleBase:RU361123}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012181447123637-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01728pel EC:4.2.2.2 Pentose and glucuronate interconversions map00040
Quorum sensingmap02024


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001218s00032868.1PF00544.14Pec_lyase_C1222023.50E-08
Glyur001218s00032868.1PF00544.14Pec_lyase_C2052621.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.542
SRR1783600control33.782
SRR1783602moderate drought stress44.310
SRR1811619moderate drought stress45.246

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.052
DRR006520Root Summer glycyrrhizin high producing strain29.301
DRR006521Root Winter glycyrrhizin high producing strain53.316
DRR006522Root Winter glycyrrhizin high producing strain52.313
DRR006523Root Summer glycyrrhizin low producing strain25.954
DRR006524Root Summer glycyrrhizin low producing strain26.094
DRR006525Leaf Summer glycyrrhizin high producing strain23.497
DRR006526Leaf Summer glycyrrhizin high producing strain22.895

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.942
SRR2868004Drought Stress(Tissue:root)35.852
SRR2967015Control (Tissue:root)37.869

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.838
SRR9715740Leave18.885
SRR9715741Leave15.537
SRR9715739Root6.991
SRR9715742Root17.694
SRR9715743Root11.544

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.115
SRR8749028MeJA induced 9h15.800
SRR8749029MeJA induced 9h7.177
SRR8749030Uninduced4.799
SRR8749031Uninduced1.411
SRR8749032Uninduced2.049

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.539
SRR8400027Control-Root33.923

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved