Gene detail information of Glyur001218s00032874.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53520.1 | 2.00E-169 | UDP-glucuronic acid decarboxylase 1 |
| NR | XP_004494986.1 | 0 | PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cicer arietinum] |
| COG | YP_007123559.1 | 2.00E-135 | nucleoside-diphosphate-sugar epimerase [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q8VZC0|UXS1_ARATH | 0 | UDP-glucuronic acid decarboxylase 1 |
| trEMBL | tr|I1LYW8|I1LYW8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01218 | 36715 | 40977 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08678 | UXS1, uxs | EC:4.1.1.35 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001218s00032874.1 | PF01370.16 | Epimerase | 103 | 157 | 1.80E-06 |
| Glyur001218s00032874.1 | PF01370.16 | Epimerase | 181 | 310 | 2.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.676 |
| SRR1783600 | control | 68.266 |
| SRR1783602 | moderate drought stress | 60.588 |
| SRR1811619 | moderate drought stress | 59.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 86.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.362 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 66.496 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 65.888 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.387 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.453 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 149.943 |
| SRR2868004 | Drought Stress(Tissue:root) | 117.230 |
| SRR2967015 | Control (Tissue:root) | 115.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 56.534 |
| SRR9715740 | Leave | 48.706 |
| SRR9715741 | Leave | 55.293 |
| SRR9715739 | Root | 49.756 |
| SRR9715742 | Root | 81.476 |
| SRR9715743 | Root | 75.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 83.096 |
| SRR8749028 | MeJA induced 9h | 68.360 |
| SRR8749029 | MeJA induced 9h | 55.420 |
| SRR8749030 | Uninduced | 45.368 |
| SRR8749031 | Uninduced | 24.434 |
| SRR8749032 | Uninduced | 35.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 117.657 |
| SRR8400027 | Control-Root | 135.596 |