Gene detail

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Gene detail information of Glyur001223s00024742.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G49190.1	sucrose synthase 2
NR	KHN20784.1	Sucrose synthase 2 [Glycine soja]
COG	YP_003529337.1	sucrose synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|O24301\|SUS2_PEA	Sucrose synthase 2
trEMBL	tr\|K7MBG3\|K7MBG3_SOYBN	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}

Sequence

Transcript Sequence

>Glyur001223s00024742.1
ATGCCATCTTCAAGGTTCGATAGAGCTTCCAGTTTGNGGGACAGAGTGCAAGATACCCTCTCTAGTTACCGCAACGAGTTGATCTCCCTTCTCTCCAGGTATGTCGCTAAGGGGAAAGGAATACTTCAACCGCATGACCTGCTGGATGAGGTAGAAAAGATTGTCAAAGAGGATGAAGGGATGCAAAAACTCAAAGATAGCCCCTTTGTCAAAGCACTTGAATCTGCAAAGGAAGCTATAGTTCTACCTCCTTTCGTGTCTATAGCTTTTCGTCCAAGACCTGGTGTTTGGGAGTATGTTCGTGTTAATGTCTTTGAACTCATTGTGGATAATCTGAGTGTTGCAGAATATCTCCGATTCAAAGANGAACTTGTAGATGGAGAGTGTACAGACAATTATGTTCTTGAACTAGACTTTGAGCCATTCAATGCAACCTTCCCTCGACCGAATCGATCATCCTCTATTGGTAATGGTGTTCATTTTCTCAACCGCCATCTTTCATCATTCATGTTCCGTAACAAAGAAAGCTTGGACCCTCTCCTTGCATTTCTTCGTACACACAGATATGATGGCCATGCAATGATGCTAAATGATCGCATTCGTAGCATATCCAAGCTCCAGTCTTCCTTAACAAAGGCAGAAGAATTCCTTTCTAAGCTCCTGCCAGATACACCTTATTCTGAATTTGAATACGAACTACAAGGAATGGGATTCGAGAGAGGTTGGGGTGATACAGCACAGAGGGTGTTAGAAATGGTGCATCTTCTACTAGACATCTTTCAGGCTCCTGATCCAAACACATTAGAAGCATTTCTAGGGAGAATTCCTATGGTATTCAATGTTGCAATTGTATCACCACATGGTTACTTTGGCCAAGCAAATGTCTTAGGTTTGCCTGATACTGGTGGACAGGTTGTTTATATACTTGATCAAGTGCGAGCTTTGGAAAATGAGATGCTGCTCAGAATTCGAAAGCAAGGACTAGATGTGTCTCCAAAAATTCTGATCGTTACAAGATTGATACCAGATGCCAAAGGGACATGTAATCAGAGACTGGAAAGAGTTAGTGGAACTGGGCACACTTATATATTGCGAGTACCTTTTAGAACCAAGAATGGAATTTTGAGAAAATGGATTTCAAGGTTTGACGTGTGGCCTTATCTAGAGACATTTGCAGAGGATGCATCAAACGAAATTGCTGCAGAGTTACAAGGAGTACCAGATCTGATAATTGGCAACTACAGTGATGGAAATCTTGTTGCAACCTTATTATCTTATAAGCTAGGAATCACACAGTGTAACATAGCTCATGCGTTGGAGAAGACGAAATATCCAGATTCTGATATATATTGGAAAAAATATGAAGACAAGTACCATTTTACTTGTCAATTCACAGCCGACCTTATTTCAATGAACAATGCAGACTTTATAATCACTAGTACATACCAAGAAATTGCAGGAAGCAAGAATAATGTTGGACAATATGAGAGCCACACAGCCTTCACTCTTCCAGGACTGTATCGTGTTGTTCATGGCATTGATGTTTTCGATCCCAAGTTTAATATCGTGTCTCCAGGGGCAGACATGTGCATATATTTTCCTTATTCAGAGAGAGAAAAGAGACTAACTTCTCTACATGGTTCAATTGAAAAAATGGTATATGGTGCTGAACAGAATGAAGAGCACATTGGCTTGTTAAATGATCGATCAAAGCCCATTATCTTTTCTATGGCAACACTTGATCAAGTGAAAAATATGACAGGGCTTGTTGAATGCTTTGGCAAAAGCTCCAAGCTGAGAGAGCTTGTGAATCTTGTTGTAGTTGGTGGTTACATTGATGTACAGAAGTCTATTGACAGAGAAGAGATAGGGGAGATAGAAAAAATGCATGGCCTCATAGAGCAATACAACTTGCATGGCCAGTTTCGTTGGATAAAGGCCCAAATGAATCGCGCCCGAAATGTTGTGGAAGCTATGACTTGTGGTCTTCCTACATTTGCCACTTGTCACGGTGGCCCTNCTGAGATAATTGAGCATGGCATTTCTGGATTCCATATTGATCCACATCACCCTGATCAGGTTGCTGCAATTTTAATTAACTTTTTTGAGCAATGCCAGCATGACCCTGAATACTGGAACAAGATTTCTGATGCAGGGCTTAGGCGCATCCATGAGAGGTATACATGGAAGGTATACTCTGAGAGGCTATTGACTTTAGCTGGTGTTTATGGCTTCTGGAAGCATGTGTCTAAGCTTGAGAGGAGAGAAACTAGGCGGTACTTGGAGATGTTTTACATTCTCAAATTCCGGGACTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01223	7195	13333	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00695	E2.4.1.13	EC:2.4.1.13	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005985 sucrose metabolic process

GO:0009058 biosynthetic process

molecular_function GO:0016157 sucrose synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001223s00024742.1	PF00862.14	Sucrose_synth	8	555	1.2e-311
Glyur001223s00024742.1	PF00534.15	Glycos_transf_1	558	649	9.30E-05
Glyur001223s00024742.1	PF00534.15	Glycos_transf_1	654	714	2.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.016
SRR1811619	moderate drought stress	0.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.739
DRR006522	Root Winter glycyrrhizin high producing strain	0.699
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.028
SRR2868004	Drought Stress(Tissue:root)	0.076
SRR2967015	Control (Tissue:root)	0.080

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.217
SRR9715740	Leave	0.022
SRR9715741	Leave	0.126
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.596
SRR8400027	Control-Root	0.332