Gene detail

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Gene detail information of Glyur001223s00024744.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06810.1	7.00E-29	acyl-CoA dehydrogenase-related
NR	XP_008246109.1	2.71E-35	PREDICTED: acyl-CoA dehydrogenase family member 11-like [Prunus mume]
COG	YP_005887615.1	1.00E-21	acyl-CoA dehydrogenase family protein [Marinobacter adhaerens HP15]
trEMBL	tr\|K7MBG0\|K7MBG0_SOYBN	4.00E-36	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G16151.1}

Sequence

Transcript Sequence

>Glyur001223s00024744.1
AAAAAAAATAGAGAGACATTGCGTAGTTCAATTGGACCCTAACAGCTCGTACTAATCGGAAAGTGGACCGTTTTGCCTGCNCTCGTCTTCTTCCCGTAACAGTTACACGCACCAAAACCAAATCACACACACTATCATCTTCATCTTCATCAATATCTCTCTGTGTGTTATTGATCGAATTTGGATATGGCGAGGAACACATCTGACCTCATAGCCAAATTCAACCCAGCTGCTCACCATTTCAACCTCGACTCTCTGCTCCGCTATTGCTCTTCCCACGTTTCTGGCTTCCCTCTTTCCCCCACTCATTTCAATCTCTCCCAGTTTGGGCATGGACAGTCCAACCCCACGTACTTGATTGAAGTGGGTTCACAGGGATCCATGGTGAAGCGCTATGTTCTGAGGAAGAAGCCTCCGGGGAAATTGTTGGCTTCAGCTCATGCTGTTGAGAGAGAGTTTATGGTTCTCCAGGCACTGGGCAATCATACCCAAGTTCCGGTTCCCAAAGTCTTCTGTTTGTGCAATGATCCAACTGTTATTGGTACAGCATTTTATATCATGGAGTATTTGGATGGGCGCATATTTATTGATCCCAAACTACCAGGTGTGGCACCAGAGAGGAGGAGGGCACTTTACCGAGAAACTGCTAAAACCTTAGCTTCCTTACATTCTGCTAACGTGGATTCCATTGGTCTGGGAAAATATGGGCGACGTAATGATTATTGCAAAAGACAGATTGAGAGGTGGGCTAAGCAATATGTTGCCTCAACCAGTGAGGGTAAACCTGCAAGAAATCCAAAAATGTTTGCCCTGGTTGATTGGCTACAGCATCATATCCCTNCTGAAGATTCTTCAGGAGCAACAGCAGGTTTGGTTCATGGAGATTTTCGCGTTGACAATCTTGTGTTCCATCCCACAGAGGATCGAGTAATCGGCATACTTGACTGGGAACTGTCTACCCTTGGTAACCAAATGTGCGATATAGCATATATCTGTATGCCTTATATTGCAGATGTTGGGCAACAAAAAATACAACCAGGTATGGAACGTTCTGGATTACCAGAGGGAATTCCTTCACTACCAGAGTATTTGGCTGAATATTGCTCTCTAGCGGGAAGAAAATGGCCTGTTGCTGAATGGAAGTTCTATGTTGCCTTTTCTTTTTTCCGTGGGGCTTCAATTTATGCAGGAGTGTATAACAGATGGGTTCAGGGTAATGCGTCAGGAGGTGAGCGTGCTCGTTACACAGAAGTACTTGCTAATGGTCTTATAGATACCGCTTGGGAATTTATTGAATGCAGATCTGTGCTTCCTCAGCATCCTCCTTCAGATGTAATTGCACAAGACTATTCAAAAGAGTTAGTGAAGGGGAATGATATGCAGGGACTCTTAAATCAGGGGAAGTTTGTCCCTAGTCAAAAGGTTTTAGCGCTGAGGAACAAATTAATCAATTTCATGGAGGAACACATATACCCCATGGAAAATGAATTTTATAAACTTGCCCAGTCTGAATCGCGTTGGACTGTTCACCCAGCAGAGGAAAAGCTGAAGGAAATAGCAAAGAAAGAAGGCTTGTGGAACTTATGGATTCCTTTTGATAGTGCTGCGAGGGCAAAGAATCTTATTTTTGACGGGAGCAATAATGGTCTCTCTACTGATCCAAATGACTTGTTATTGGGTGCTGGTCTAACAAATCTTGAATATGGACACCTTTGTGAGATCATGGGTCGTTCTATTTGGGCTCCACAAATATTTAACTGTGGTGCACCTGACACAGGNAATATGGAGGTATTACTGCGCTATGGAAATAAGGAACAACTGCAAGAATGGCTTATTCCTTTGCTTGAGGGGAAGATTAGGTCTGGATTTGCAATGACAGAACCACGTGTTGCATCTTCTGATGCAACCAATATTGAGTGTTCTATCAAAAGGCAAGGAGATTCATATATTATCAATGGGACAAAATGGTGGACTAGTGGTGCTATGGATCCAAGATGCAGAATTCTGATAGTCATGGGGAAAACCGACTTCAATGCAGCAAAGCATAAACAACAATCTATGATCTTAGTGGATATGCAGACTCCTGGTGTTCACGTAAAGAGACCATTGATGGTGTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTAACATTTGAGAATGTTCGTGTGCCAGCTAAAAATATCTTACTGGGTGAAGGACGTGGATTTGAGATCGCTCAAGGTAGGTTAGGTCCTGGAAGGCTGCACCATTGTATGAGACTGATAGGTGCTGCTGAGCGAGGCATGCAAATGATGGCTCAAAGAGCTGTTAGTAGAAGAGTATTTGGGAAATTGATAGCTCAACATGGCTCATTTCTTTCAGATCTGGCCAAGGTATTAGAATTGAGCAAGCATAGCACTCAAACNCATGGAATTGGGTTAAAAAACCTACTATCCGGAAGTGTCAAAAATCGAAATCTCTTTCAATTTGATTTTATACAGGATTTTCGCTTACACCGCTATCTGTTGTTCAGTGCCGAATAGAGCTAGAGAAGACCAGATTGTTGGTGTTGGAAGCCGCGGACCAGCTTGATGGNCATGGGAACAAAAAAGCTCGGGGGATAATCGCAATGGCTAAGGTATCCGCGCCAAACATGGCGCTAAAGGTGCTTGACATGGCCATGCAAGTGCATGGAGCAGCTGGTTTGTCATCTGACACAGTCTTGGCACATTTGTGGGCAACTGCAAGGACCCTCAGAATCGCCGATGGTCCAGATGAAGTCCACTTGGGTACCATAGCGAAGTTAGAACTACAGAGAGCCAAGCTTTGAGAATCTGAACATTTTGCACCATGGGAACAAAACGAAAAGTCGACAAATAAAAAACTAAGGCTTTGTTTGGATAACAAACTTATCTATTGCTTATGGCATAAGCTGTATAAGCTACTTTTATAATCGAAGAAAAATTATAGTGAAACTTATTTTATATAAGTCATAAGCTGTTTTGATAAGCTATCATGGNTAGCTTATNAAAAATAAGCCCAAAACAGCTTATGAATTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01223	17105	23149	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00249	ACADM, acd	EC:1.3.8.7	Carbon metabolism	map01200
			Fatty acid metabolism	map01212
			Propanoate metabolism	map00640
			Fatty acid degradation	map00071
			Valine, leucine and isoleucine degradation	map00280
			beta-Alanine metabolism	map00410
			PPAR signaling pathway	map03320

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001223s00024744.1	PF00441.19	Acyl-CoA_dh_1	1	58	1.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.918
SRR1783600	control	25.241
SRR1783602	moderate drought stress	32.465
SRR1811619	moderate drought stress	32.279

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.629
DRR006520	Root Summer glycyrrhizin high producing strain	31.226
DRR006521	Root Winter glycyrrhizin high producing strain	37.401
DRR006522	Root Winter glycyrrhizin high producing strain	36.308
DRR006523	Root Summer glycyrrhizin low producing strain	29.422
DRR006524	Root Summer glycyrrhizin low producing strain	29.550
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.773

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	31.221
SRR2868004	Drought Stress(Tissue:root)	35.255
SRR2967015	Control (Tissue:root)	37.837

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	34.116
SRR9715740	Leave	24.723
SRR9715741	Leave	41.807
SRR9715739	Root	12.020
SRR9715742	Root	36.996
SRR9715743	Root	31.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.896
SRR8749028	MeJA induced 9h	39.095
SRR8749029	MeJA induced 9h	22.191
SRR8749030	Uninduced	59.061
SRR8749031	Uninduced	46.304
SRR8749032	Uninduced	37.798

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	39.680
SRR8400027	Control-Root	40.683