Gene detail

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Gene detail information of Glyur001223s00024745.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49180.1	2.00E-118	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_004487827.1	0	PREDICTED: pectinesterase/pectinesterase inhibitor-like [Cicer arietinum]
COG	YP_003997686.1	3.00E-39	pectinesterase [Leadbetterella byssophila DSM 17132]
Swissprot	tr\|Q42920\|PME_MEDSA	0	Pectinesterase (Precursor)
trEMBL	tr\|I1L0X0\|I1L0X0_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur001223s00024745.1
ATGGGTGAAAATAATAATAATGGTGAAACCAAAGGGCAAGAACAGAGCAATGGCAAAATCTTCAACACCCAGAGAAACGAGTTGTCAAACCACATACATAACTCCACCCTCTACCATGAGTTGGCAAAGGACAACATGACAAAACAAGCCATGGAAATTTGCAAGGAAGTGTTGGATTATGCTGTTGATGGGATTCACAAATCTATTAACAATTTGGACAAGGTTGATTTCAACAAGTTGGGTGAATATGCCTATGACCTCAAGGTTTGGCTCACGGGTACCCTCTCTCACCAACAAACATGCTTGGATGGTTTCGAGAACACGACCACAAAGGCTGGTGAAACCATGGCCAAGGTGTTGAATACCTCTTTGGAGCTAAGTAGCAATGCCTTGGACATGGTCAATACTGTCTCTACATTACTCAAGGATCTCAACCTTAGCACGAAAAATAATGTTGCTAATAGGAGGCTTCTCTCCGATGAACTAACACTTGTAGATGGTTTTCCTACATGGGTGAGTGAAGGGCAGAGACGCATTCTTCAGTTTAAGACACTAACTGATGCACTTAAGACTGTTCCCCCTAATAATGCACAACCTTTTGTTATTTATGTTAAGGCTGGCGTGTACAAGGAGAATGTGAATGTGGGTAAAGAAATGACACATGTCACAATAATCGGAGATGGACCCACAAAGACCAAATTCACTGGCAGCTTAAACTATGTTGATGGTGTCCAAACTTACTTCAGTGCAACCTTTGGGGTGAACGGTGCAAACTTCATGGCAAAGGACGTAGGGTTCGAGAACACGGCGGGGTCGAACAAGCACCAAGCGGTGGCACTCCGAGTAACAGCAGACCAAGCGGTGTTCTTCAACTGCCAAATGGACGCCTTCCAAGACACCCTCTACGTCCAATCCCAACGCCAGTTCTACCGCGACTGCGCCATCAGCGGAACCATCGACTTCCTCATCGTGCGAAAGCCCCTCGACGCCCAACAGTGCATGGTCACAGCAGGAGGAAGGACCAAATCCGATAGCCCCAGTGCCCTCGTCTTCCAGGCATGCCACTTCACCGGCGAACCCGAGGTCGCAACGATAAAGCCCAAATTCTCGTACCTGGGGAGACCCTGGAAAACATACTCCAAGGTTGTCATCCTCGATTCCAACATCGACGATATCTTCCTCCCCGAAGGGTACATGGCGTGGATGGGGAATGCCTTCAAGGACACGTGTACCTACTACGAGTACAACAACAAGGGCCCCGGTGCTGACACGTCAGCCAGGGTTAAGTGGCCAAATGTCAAGACCATCACATCTGCCGCTGCAGCCGATTACTACCCCGGGAGGTTCTTCGAACTTGCCAACTCAACGGAACGGGATTCTTGGATCGTTGACTCCGGGGTCCCCTATTCCCTTGGCCCTATGATCAGTGGCTTCAATTCGGTTCCCGCGGCAGGGAAAGGAAACGGACCCCAACCCACTACTACTACGACTACTCGCCAGCTGATATCATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01223	24837	27507	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0004857 enzyme inhibitor activity GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001223s00024745.1	PF04043.10	PMEI	35	133	3.70E-15
Glyur001223s00024745.1	PF01095.14	Pectinesterase	181	450	1.10E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.111
SRR1783600	control	0.129
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.293
DRR006522	Root Winter glycyrrhizin high producing strain	0.254
DRR006523	Root Summer glycyrrhizin low producing strain	0.067
DRR006524	Root Summer glycyrrhizin low producing strain	0.146
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.044
SRR2868004	Drought Stress(Tissue:root)	0.061
SRR2967015	Control (Tissue:root)	0.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.275
SRR9715740	Leave	0.078
SRR9715741	Leave	0.000
SRR9715739	Root	0.742
SRR9715742	Root	0.082
SRR9715743	Root	0.059

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.008
SRR8749030	Uninduced	0.005
SRR8749031	Uninduced	0.106
SRR8749032	Uninduced	0.269

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.139
SRR8400027	Control-Root	0.104