Gene detail information of Glyur001223s00024747.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16720.12.00E-32TOXICOS EN LEVADURA 2
NRKEH37217.19.84E-109RING-H2 zinc finger protein [Medicago truncatula]
Swissprottr|Q8L9T5|ATL2_ARATH2.00E-62RING-H2 finger protein ATL2
trEMBLtr|A0A072V5V7|A0A072V5V7_MEDTR4.00E-109RING-H2 zinc finger protein {ECO:0000313|EMBL:KEH37217.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012233714638000-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001223s00024747.1PF13639.1zf-RING_21121553.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.579
SRR1783600control25.021
SRR1783602moderate drought stress11.100
SRR1811619moderate drought stress11.110

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain341.422
DRR006520Root Summer glycyrrhizin high producing strain341.990
DRR006521Root Winter glycyrrhizin high producing strain3.747
DRR006522Root Winter glycyrrhizin high producing strain4.226
DRR006523Root Summer glycyrrhizin low producing strain449.678
DRR006524Root Summer glycyrrhizin low producing strain452.157
DRR006525Leaf Summer glycyrrhizin high producing strain90.722
DRR006526Leaf Summer glycyrrhizin high producing strain90.676

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.097
SRR2868004Drought Stress(Tissue:root)92.814
SRR2967015Control (Tissue:root)231.189

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave367.625
SRR9715740Leave448.540
SRR9715741Leave372.188
SRR9715739Root1498.716
SRR9715742Root868.374
SRR9715743Root969.349

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h517.638
SRR8749028MeJA induced 9h248.948
SRR8749029MeJA induced 9h246.611
SRR8749030Uninduced214.975
SRR8749031Uninduced51.623
SRR8749032Uninduced81.177

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.984
SRR8400027Control-Root131.390

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved